Gene detail

Gene detail information of Glyur000134s00009792

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54340.1	8.00E-52	K-box region and MADS-box transcription factor family protein
NR	XP_007157954.1	7.61E-153	hypothetical protein PHAVU_002G112200g [Phaseolus vulgaris]
Swissprot	tr\|P23706\|DEFA_ANTMA	3.00E-75	Floral homeotic protein DEFICIENS
trEMBL	tr\|V7CKR2\|V7CKR2_PHAVU	3.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:ESW29948.1}

Sequence

Transcript Sequence

>Glyur000134s00009792.1
ACGAGTAGTTGCTACTTGCTACTCACTCACTATAGAGACACAGCTCCCTTTGGCTTTACTATTAGCCTCTCCCCATCTATTAATATTGCTGTTTGGAAAAGGAAAAAAAGGAAGAAGAGAAGTTCCAGCTGAAGTACACCATTAAGCATATCAGCTAGCTAGCTATAGTGAGTGAGTGAGTGAGTGATCTGGAAGATGGGTCGTGGGAAGATTGAGATAAAGTTGATCGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCCCTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGACAAAGAAGATCGTTGATCAGTATCAGAAGACTTTGGGAGATATTGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGACAACTTGAAGAAACAGAAAGATATTAACAATAAACTCAGACGACAGATCAGGCATAGGATAGGTGAGGGTTTGGATATGGACGATATGAGCTTCCAGCAACTGCGCAATCTTGAAGAGGATATGGTTTCTTCCATAGGGAAAATACGCGAAAGGAAGTTCCATGTGATCAAGACTCGGACTGATACCTGCAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGAAATCTGCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATCATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCAACCTGTATGCATTCTGTCAGCACCATACTCACCTGAGTCTTCCCCACCACCNTGGAGGAGGAGATCAAGGGTTTAAAACTGACGATGATCTGCGCCTTGCTTGATCAGTGGAAGAATCCATCAAGGTCATGTTAATGTTGAATTTGCTTAAACTAGACATNTAAATTATTAATCTGCTAGCGCTTGTTATTTAAAGTTTCTCTGCATTATCCTATTGATCCTATTAAACCCCAAGTTGGTTCCAACCTCTGCATCTAGGTAGAGAATTAGCGAGCTAGCTTATGGTGTTTAGCAAGAGTGTGGCCAGACAGAAAACAAAATGGCTGTAATTTATTATCTATTATAAGTTTGTATTGGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	307078	309366	+

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009792.1	PF00319.13	SRF-TF	9	59	2.00E-27
Glyur000134s00009792.1	PF01486.12	K-box	76	173	3.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.271
SRR1783600	control	52.428
SRR1783602	moderate drought stress	47.527
SRR1811619	moderate drought stress	47.567

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	92.921
DRR006520	Root Summer glycyrrhizin high producing strain	92.063
DRR006521	Root Winter glycyrrhizin high producing strain	23.199
DRR006522	Root Winter glycyrrhizin high producing strain	22.435
DRR006523	Root Summer glycyrrhizin low producing strain	61.964
DRR006524	Root Summer glycyrrhizin low producing strain	62.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.032
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.980

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.037
SRR2868004	Drought Stress (root)	3.664
SRR2967015	Control (root)	4.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.001
SRR9715740	Leaf	0.382
SRR9715741	Leaf	1.978
SRR9715739	Root	22.956
SRR9715742	Root	50.746
SRR9715743	Root	48.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.174
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.024
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.771
SRR8400027	Control - Root	59.371