Gene detail

Gene detail information of Glyur000134s00009790

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36400.2	0	FAD-linked oxidases family protein
NR	XP_004512090.1	0	PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cicer arietinum]
COG	YP_004687527.1	5.00E-99	FAD dependent oxidoreductase [Cupriavidus necator N-1]
Swissprot	tr\|O23240\|D2HDH_ARATH	0	D-2-hydroxyglutarate dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|G7KGB4\|G7KGB4_MEDTR	0	D-2-hydroxyglutarate dehydrogenase {ECO:0000313\|EMBL:AES95056.2}

Sequence

Transcript Sequence

>Glyur000134s00009790.1
AAATATCTTCCTCAATTTTTTGTCCGCGCAGTTTCCTGGGACAAACAAAGGTCAATCTGATTGCAAGCACCAACTGAAACCAAACTGAACTTCAACTGGTGAGAGTGAAAGATGGTAAATCGGAATAATAGCAGNGGCACACTTCGCTTCCTCACCCGCACCTTCTACCCATTCTTCCATCACCCCCGGAACCCAGTTCCTCTCCCTCCCGCAACGTCCTGTTATCATTTTACCACTGTGACAGGTTCTGATGAAAATCACAGACAGTTACTTCGCAGTATTGTTCGCGGGGAGCNTAAAGCTTTGTCCCTTTTCAACCCATTAAGAAATTCAATGAAAACTAAGCAACTGGGTGTTGGAACTCCGAGCGGAATTCNGCACAGATGCTATGGTTCGATGGCTGGGTTGGTTCAAAGGAACCCCGGATTCTCAAGGTTGAACGATGATGATGTTAGATACTTCGAGGGGATATTGGGTACAAAAAATGNCATACAGGATGAGGAGAAGCTCATAGCTGCAAACACTGATTGGATGCNTAAATACAAAGGCTCTAGCAAGCTCCTTTTACAACCATCGAGCACTGACCAGGTTTCTCAGATTCTTAAGTACTGTAACTCCAGATGCCTGGCTGTGGTTCCCCAAGGTGGAAACACTGGTCTTGTGATTGTCAGTCTTAGTTCTATGAATAATATTATATCTTTCGACAAGGTTAGTGGAANATTGGTATGTGAAGCTGGGTGCATATTGGAAAATATAATGTCATTCCTGGACAATGAAGGATTTATTATGCCACTAGACTTAGGTGCTAAAGGGAGTTGTCAGATTGGTGGAAATGTTTCAACTAATGCTGGTGGTTTGCGTCTTGTTCGTTATGGATCTCTTCATGGAAATGTACTTGGTGTTGAAGCTGTTCTAGCAAATGGCACTGTCCTTGACATGCTTAAGACATTGCGCAAAGATAATACTGGCTATGATTTGAAACATCTATTTATAGGAAGTGAAGGTTCCTTGGGAATTGTTACCAAGGTTTCGATACTTACCCCACCAAAGTTATCTTCAAAACTGCTACAGGAAGCAAAAAGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTTTAGACAGCCAGTCTATGAATTTGGTTACAAATCACTTGGAAGGTGCTCGAAATCCATTTCCAACATCACTNCATAACTTTTATGTTTTGATTGAGACAACTGGCAGTGATGAATCTTCTGACAAACAAAAGCTTGAAGCGTTTCTACTTGGCTCCATGGAAAATGAATTGGTATCTGATGGTGTTCTTGCACAAGACATAAACCAAGCATCATCCTTTTGGCGTCTACGTGAGGGTATATCAGAGGCNTTGATGAGAGCAGGAGCTTTTTACAAGTATGACTTATCGATACCTGTTGAAAATCTGTACAATCTGGTCGAAGAAATACGCTCCAGACTAGGTGATGAAGCTAATGTACTTGGATATGGTCACCTTGGAGATAGTAATTTACATTTAAATATTTCTATTCCTCAGTACGATGACAAGATTTTATCTCAAATTGAGCCTTTTGTATATGAATGGACGTCTAAGCACAGTGGCAGTATTAGCGCAGAGCATGGCCTGGGTCTAATGAAAGCTAACGAGATTTTCTACAGCAAGTCACGTGAAACTGTGCAACTGATGGGTTCAATCAAGAATTTGTTGGATCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCACTCTATCATTTCATAATTTGACTTAGGGCATGTTTGATTTTCAGTTACAAACATACNTTTGNGTTTAAAATTACCNTTTGTCCAAAAGTAACTACTATAATTACTTNNAGTTCAAACNTATTTTTNTAATCTTCCAACTGAAAACCAAACATGCACTTAGTATTGTATTAGTCTTGTNTTGTAGTTTGCTCCCTCCCTTGAAGTGAGACAATGTTACTTGTTTCATTCAATCGCTATAGATTGCGGAAACAAGCCAGGAGACAGGTGTTTGCTGCCATGTAGTAATAATTTATTGTTAGAATCCAAAACAAAGAAACCCNTACTGCTACAGTGTACTATAGTTGTTGTGTACTAAATAAATTCGTGTCAATATTTCACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	288730	295060	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009790.1	PF01565.18	FAD_binding_4	150	275	8.00E-26
Glyur000134s00009790.1	PF02913.14	FAD-oxidase_C	317	541	4.20E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.556
SRR1783600	control	10.341
SRR1783602	moderate drought stress	13.909
SRR1811619	moderate drought stress	13.910

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.777
DRR006520	Root Summer glycyrrhizin high producing strain	20.176
DRR006521	Root Winter glycyrrhizin high producing strain	13.669
DRR006522	Root Winter glycyrrhizin high producing strain	13.355
DRR006523	Root Summer glycyrrhizin low producing strain	18.204
DRR006524	Root Summer glycyrrhizin low producing strain	17.792
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.283
SRR2868004	Drought Stress (root)	10.248
SRR2967015	Control (root)	16.413

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.540
SRR9715740	Leaf	16.197
SRR9715741	Leaf	12.854
SRR9715739	Root	1.732
SRR9715742	Root	10.400
SRR9715743	Root	6.002

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.830
SRR8749028	MeJA induced 9h	5.799
SRR8749029	MeJA induced 9h	3.572
SRR8749030	Uninduced	4.581
SRR8749031	Uninduced	1.275
SRR8749032	Uninduced	1.639

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.289
SRR8400027	Control - Root	16.101