Gene detail

Gene detail information of Glyur000134s00009789

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36390.1	0	Methylthiotransferase
NR	XP_003516555.1	0	PREDICTED: CDK5RAP1-like protein-like [Glycine max]
COG	YP_003291331.1	6.00E-165	MiaB family RNA modification protein [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q8H0V1\|CK5P1_ARATH	0	CDK5RAP1-like protein
trEMBL	tr\|K7K4A9\|K7K4A9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G37500.2}

Sequence

Transcript Sequence

>Glyur000134s00009789.1
GGTTCGACGATACGACGAGAAACTGCTGCGTTAAGGCGAGTTGCAAATGGATGTGGTTTTTGTGACCGCACGGACCCTATCCAGCCGATAACAGCAGTTGCAGCGGTGATGTGAATGTGGATGTGAGTGTATGCGTTTCGTGTGTCTCATTTCAATTCAGAATTGAGATGGCTTCGGCGGCACTGTCCTCCATCATCCACCAACCCCACACTGCTCAACGCCTTAAGCTTCATCGTCCATCTTCCTGCGTCTCCACTCTCAGAAATGTTTTCTCTCCTCACAAATCCTCAAGTTCATCGTCACGCCCTCTCAATCTCATCACCAGTTCTAGAAGCTTCTCTCTTTCCAACAAATCGGAGGAACCCTCTCTCCGCCACTTCATCGCTCGAGGAGCCACTCTTACCGCTTCCCAACTTCAACCCCACCTTGTGCCAGATACCGAAGTTCATTCAACTGGTCGTATATATCACGAGACCTATGGATGTCAAATGAACGTTAATGATATGGAGATTGTCCTGTCTATAATGAAAAATGCAGGCTACGGTGAAACTGTCAGTGTTCCTGAGAGTGCAGAAATAATATTCATCAACACTTGTGCCATCAGAGAAAATGCAGAGCACAAAGTGTGGCAGAGGCTTAATTACTTTTGGTTTCTCAAGAGGCATTGGAAGAGCAATGTTGCTACTGGAAGGTCGCAATCCGTGCGCCCCCCAAAAGTAGTTGTTCTGGGATGTATGGCTGAGAGGTTAAAGGAAAAGATACTCGATGCAGATAAGATGGTCGATGTGGTCTGCGGGCCTGATGCTTATAGGGATTTGCCACGGTTACTGGAAGAGGTTGACTATGGCCAGAAAGGGATCAACACTNTTCTTTCGCTTGAGGAGACTTATGCTGATATTAATCCGGTTCGGATCTCCAAGAATTCAATCAGTGCTTTTGTCTCAGTGATGAGGGGTTGCAACAATATGTGCTCATTCTGTATTGTACCTTTCACTAGAGGCAGAGAGCGATCGCGTCCCGTGGATTCCATTGTGAGGGAGGTGGCGGAGCTCTGGAAAGAGGGCGTGAAAGAAGTAACGCTTCTGGGCCAGAATGTGAACAGCTACAATGATGCATCTGGGATTGAAAAGGAGGTTGAATCAGGGTCCAACTGGAAACTTAGTGAAGGATTTTCCACCATTTTGAAGGTCAAAAACACGGGCTTAAGGTTTTCTGATCTATTAGATCGACTCTCCTCAGAATTTCCTGAGATGCGGTTCAGATTCACATCTCCACACCCTAAAGATTTTCCAGATGACTTGCTTTATCTTATGCGAGAAAGGCATAATATATGCAAATTGATACATTTACCTGCACAAACAGGAAGTAGCACAGTGCTTGAGAGAATGAGACGGGGATATACTCGAGAGGCGTACTTGAATCTTGTGCAAAAAATTCGGAGTATTATTCCAGATGTGGCCTTAAGCAGTGATTTCATTAGCGGTTTTTGTGGAGAAACAGAAGAGGAACATTCGGACACGTTGACTCTNGTGAAAGAGGTTGGTTATGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAAGTATGTTGATGATGTCCCTGAGGAAGTAAAGCAGAGGAGGCTAACCGAACTTATTGAGACTTTCCGCGAGAGCACAGGGAAGTGTTATGACTCTCAGGTTGGAACTCTACAGCTTGTATTAGTTGAAGGACCCAATAAGAGAGCTCCAGATACTGAGCTCATGGGCAAGAGTGACAAGGGCCATCGTGTGTTATTTGTCAACCTGCCTATGCCAGACCGGGAAGATGTTAATACGAAGCGNAATCCTGTGGTTGGCGATTATGTTGAAGTCCGCATAACGAAATCTTCAAGGGCATCACTCTTTGGCCAAGCACTTGCTATAACTAAACTGAGTTCATTTTACCATAATCTGGATAAAGAAGCTGTTGCATGCAGCATGTAAAACCTTGCTGCATAAACAGTTTGTCATGACAATTTTTGGATATAGTCATCGTAAATTGCTTTTTCCCTTGTTTCGTTGAGTTGACTACACATTTTATGGGGAAAACACTGCAACACCACACGGGAGCGAGATTGTTCATTTACCTGCGACATGTCAGCTAGATCAAAATTGTATCCTCTGTTAATCTTCTCTTTACATGAAAATGGTTNGAGTGTACATTAAACTATACAATGCAATGTACCACTGAGAACCCTATTGGCACCCTGCAGTGCAACATCAAAATCAAATAGCCTAGGGGAGGATTGCTGTGATTTTTGTCTTTTAAACATTGGTTGATAAGTGAGCTTTGATGAAGCAGCACACGGAAGAATTAATATTGCCTTTGGCCCATCATATTTCTTGTTTAAATACAAACATCACAGGTCTTAGTAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	277869	281759	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009451 RNA modification

GO:0043412 macromolecule modification

molecular_function

GO:0003824 catalytic activity

GO:0016740 transferase activity

GO:0051536 iron-sulfur cluster binding

GO:0051539 4 iron, 4 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009789.1	PF00919.15	UPF0004	98	210	5.70E-30
Glyur000134s00009789.1	PF04055.16	Radical_SAM	258	455	3.70E-39
Glyur000134s00009789.1	PF01938.15	TRAM	509	584	1.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.878
SRR1783600	control	15.901
SRR1783602	moderate drought stress	12.867
SRR1811619	moderate drought stress	12.907

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.952
DRR006520	Root Summer glycyrrhizin high producing strain	15.835
DRR006521	Root Winter glycyrrhizin high producing strain	8.657
DRR006522	Root Winter glycyrrhizin high producing strain	8.353
DRR006523	Root Summer glycyrrhizin low producing strain	13.318
DRR006524	Root Summer glycyrrhizin low producing strain	13.297
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.665
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.443
SRR2868004	Drought Stress (root)	17.206
SRR2967015	Control (root)	17.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.032
SRR9715740	Leaf	62.427
SRR9715741	Leaf	44.350
SRR9715739	Root	8.767
SRR9715742	Root	13.052
SRR9715743	Root	13.675

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.494
SRR8749028	MeJA induced 9h	20.630
SRR8749029	MeJA induced 9h	13.492
SRR8749030	Uninduced	9.473
SRR8749031	Uninduced	6.032
SRR8749032	Uninduced	5.734

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.034
SRR8400027	Control - Root	16.785