Gene detail information of Glyur000134s00009785 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51030.1 | 9.00E-49 | thioredoxin H-type 1 |
| NR | CAC36986.1 | 8.29E-74 | thioredoxin h [Pisum sativum] |
| COG | NP_070969.1 | 2.00E-18 | thioredoxin [Archaeoglobus fulgidus DSM 4304] |
| Swissprot | tr|Q43636|TRXH_RICCO | 4.00E-64 | Thioredoxin H-type |
| trEMBL | tr|Q9AR82|Q9AR82_PEA | 3.00E-74 | Thioredoxin {ECO:0000256|PIRNR:PIRNR000077} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00134 | 249370 | 251734 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000134s00009785.1 | PF00085.15 | Thioredoxin | 11 | 114 | 4.00E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.356 |
| SRR1783600 | control | 4.018 |
| SRR1783602 | moderate drought stress | 3.394 |
| SRR1811619 | moderate drought stress | 3.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.220 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.253 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.397 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.454 |
| SRR2868004 | Drought Stress (root) | 10.419 |
| SRR2967015 | Control (root) | 7.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.992 |
| SRR9715740 | Leaf | 7.787 |
| SRR9715741 | Leaf | 5.939 |
| SRR9715739 | Root | 3.631 |
| SRR9715742 | Root | 10.702 |
| SRR9715743 | Root | 7.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.109 |
| SRR8749028 | MeJA induced 9h | 1.435 |
| SRR8749029 | MeJA induced 9h | 5.470 |
| SRR8749030 | Uninduced | 0.384 |
| SRR8749031 | Uninduced | 1.320 |
| SRR8749032 | Uninduced | 0.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.747 |
| SRR8400027 | Control - Root | 18.725 |