Gene detail

Gene detail information of Glyur000134s00009777

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51000.1	1.00E-125	alpha/beta-Hydrolases superfamily protein
NR	XP_004509321.1	0	PREDICTED: bifunctional epoxide hydrolase 2-like [Cicer arietinum]
COG	YP_003299257.1	3.00E-83	alpha/beta hydrolase fold protein [Thermomonospora curvata DSM 43183]
trEMBL	tr\|I3S7N1\|I3S7N1_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36273.1}

Sequence

Transcript Sequence

>Glyur000134s00009777.1
CAAGCACAAATTGACCCATTCTTTTTTCTCTTTTTGGGTTACTCCATCTCCACTTTCCCTTCCTCAGCCTTTGCTTCTCATTTATTTAGTAAATAAAATATGATCTTAATTTCAAACTTAACATGGGTTAGACTTGGACAACGATGCAGGCATATGCAATACATGGATTAATAAGGAGTAGGTAGGACTAGGAGGGAGGCACCACCATGGGTGATGAAGAAGTGAATCACCAAAGGATCAAAACCAACGGGGTATGGATTCACGTAGCAGAGCAAGGAACAACAACAGGACCACTTGTTCTGCTGCTTCATGGCTTCCCAGAAACATGGTATTCCTGGCGCCACCAGCTTAATCACTTGGCCCACCATGGTTACCATGCGGTTGCACCTGATCTAAGAGGATACGGTGACTCTGATTCTCCTCTAAACCCCAATTCCTATACCGTTTTGCACCTAGTAGCCGACCTTATAGGCTTGCTTGATCATTTTGGCCAACAACAGGCATTTGTAGTTGGATCTGATTGGGGAGCAGTAATTGGATGGTATCTNAGTCTCTTTAGACCCGATAGAGTCAAGGGACTTGTTGTTCTATCCGTTCCTTTCATTCCACGGAATCCAACCATCAAAACAGTTCAATCTATCAGTATGAGATTTGGAGATGAGAATTATGTTTCCCAATTCCAGGAACCGGGGCGAGCAGAGAGAGCTTTTGCTAGATACGATTGTTTGACAGTGATGAAGAAGTTCTTGCTGATCACCATGACAGAGTCTCTAATAGCTCCCCCTGGCATGGAGATCATTGATTTTCTGCCGACGCCTTCGGTTTTGCCATCTTGGATAACTGAGGAAGAACTCATGGTCTTTGCAGACAAGTTCCAAGAGTCTGGTTTCACTGGTCCACTCAACTATTACCGTGCAATGGATCTAAATTGGGAGCTTCTTGCCCCATGGCAGGGTTCAAAGATAACAGTTCCAATCAAGTTCATTGCTGGAGACAAAGATATTGGGTTTGAAACCAATGGTACAAAAGACTATGTGCAAGGAGATGTGTTCAGAAGCCTTGTTCCCAATCTTGAGGTCGTTATTCTTGATGGCCACCATTTTATTCATCAAGAGAAAGCTCAACAAGTCTCAGATAAATTATTTCCTTTACTCGTAAATTATCTCTGGATTAGAACTTTTTCCTTCCTTTGGAAATTCCGTATAAATCTAATCAATTTAAAAGCTGTGTGTCAACTCCTAGTCCAGAGTGTGACTTGTATTGTAACTCTTTCTTGATCCATGTAACTCTAAAACGCAGATGACAGTATGATGTTCACAAAATTATGATCCTGTATTTTCATTGGCTTTATTATCTGCAGACCAATGTAACTAGGGACTAGATACCAATCCCATGTATGGTTGAGAATTATGAAACTTNGTGCGCCCCTTTGTTTTCTAGCTTCTGCTACTATGGATATAAAAGCAGATTGGTTCACACCCGGGGTAAATTTCACACCCCTGATGTGAATACATCAGACATATGTTGTAACTTCCGTTCGGCAAAACATATTCGTTCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	187831	189914	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009777.1	PF12697.2	Abhydrolase_6	31	310	5.30E-35
Glyur000134s00009777.2	PF12697.2	Abhydrolase_6	31	310	5.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.519
SRR1783600	control	19.129
SRR1783602	moderate drought stress	23.833
SRR1811619	moderate drought stress	23.192

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.347
DRR006520	Root Summer glycyrrhizin high producing strain	7.448
DRR006521	Root Winter glycyrrhizin high producing strain	24.462
DRR006522	Root Winter glycyrrhizin high producing strain	23.704
DRR006523	Root Summer glycyrrhizin low producing strain	21.426
DRR006524	Root Summer glycyrrhizin low producing strain	21.594
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.981
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.998

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.483
SRR2868004	Drought Stress (root)	84.105
SRR2967015	Control (root)	84.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.901
SRR9715740	Leaf	11.112
SRR9715741	Leaf	19.686
SRR9715739	Root	45.706
SRR9715742	Root	24.201
SRR9715743	Root	25.271

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.101
SRR8749028	MeJA induced 9h	68.604
SRR8749029	MeJA induced 9h	62.846
SRR8749030	Uninduced	124.078
SRR8749031	Uninduced	105.830
SRR8749032	Uninduced	96.771

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.118
SRR8400027	Control - Root	30.764