Gene detail information of Glyur000134s00009772 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17760.1 | 2.00E-146 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_004512073.1 | 0 | PREDICTED: 26S protease regulatory subunit 8 homolog isoform X1 [Cicer arietinum] |
| COG | YP_591316.1 | 6.00E-32 | ATPase AAA [Candidatus Koribacter versatilis Ellin345] |
| Swissprot | tr|P46465|PRS6A_ORYSJ | 8.00E-14 | 26S protease regulatory subunit 6A homolog |
| trEMBL | tr|I1LHW1|I1LHW1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G07620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00134 | 157110 | 170358 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000134s00009772.1 | PF14363.1 | AAA_assoc | 34 | 130 | 2.80E-24 |
| Glyur000134s00009772.1 | PF00004.24 | AAA | 251 | 388 | 1.00E-15 |
| Glyur000134s00009772.1 | PF14363.1 | AAA_assoc | 555 | 651 | 7.90E-18 |
| Glyur000134s00009772.1 | PF00004.24 | AAA | 766 | 907 | 3.80E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.021 |
| SRR1783600 | control | 42.244 |
| SRR1783602 | moderate drought stress | 43.525 |
| SRR1811619 | moderate drought stress | 43.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.058 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.916 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 150.974 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 147.896 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.866 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.817 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.313 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.523 |
| SRR2868004 | Drought Stress (root) | 11.014 |
| SRR2967015 | Control (root) | 8.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.253 |
| SRR9715740 | Leaf | 3.043 |
| SRR9715741 | Leaf | 3.875 |
| SRR9715739 | Root | 15.302 |
| SRR9715742 | Root | 24.145 |
| SRR9715743 | Root | 21.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.024 |
| SRR8749028 | MeJA induced 9h | 7.035 |
| SRR8749029 | MeJA induced 9h | 3.692 |
| SRR8749030 | Uninduced | 2.408 |
| SRR8749031 | Uninduced | 1.064 |
| SRR8749032 | Uninduced | 0.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.942 |
| SRR8400027 | Control - Root | 23.962 |