Gene detail information of Glyur000134s00009756 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10390.1 | 1.00E-71 | Histone superfamily protein |
| NR | NP_001238509.1 | 1.58E-89 | uncharacterized protein LOC100306416 [Glycine max] |
| Swissprot | tr|P68428|H32_WHEAT | 7.00E-92 | Histone H3.2 |
| trEMBL | tr|W5A3T1|W5A3T1_WHEAT | 5.00E-90 | Histone H3 {ECO:0000256|RuleBase:RU004471} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00134 | 69374 | 69784 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000134s00009756.1 | PF00125.19 | Histone | 58 | 132 | 5.00E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.843 |
| SRR1783600 | control | 6.922 |
| SRR1783602 | moderate drought stress | 2.019 |
| SRR1811619 | moderate drought stress | 1.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.994 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.081 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.147 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.507 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.718 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.970 |
| SRR2868004 | Drought Stress (root) | 19.092 |
| SRR2967015 | Control (root) | 19.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.660 |
| SRR9715740 | Leaf | 0.721 |
| SRR9715741 | Leaf | 1.832 |
| SRR9715739 | Root | 6.416 |
| SRR9715742 | Root | 3.071 |
| SRR9715743 | Root | 3.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.170 |
| SRR8749028 | MeJA induced 9h | 13.927 |
| SRR8749029 | MeJA induced 9h | 21.092 |
| SRR8749030 | Uninduced | 1.375 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.994 |
| SRR8400027 | Control - Root | 30.008 |