Gene detail information of Glyur000134s00009748 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66520.1 | 4.00E-172 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003516564.2 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] |
| Swissprot | tr|Q9FJY7|PP449_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g66520 |
| trEMBL | tr|I1J8T8|I1J8T8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00134 | 24393 | 25949 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000134s00009748.1 | PF13041.1 | PPR_2 | 74 | 122 | 1.10E-11 |
| Glyur000134s00009748.1 | PF01535.15 | PPR | 150 | 176 | 0.18 |
| Glyur000134s00009748.1 | PF13041.1 | PPR_2 | 206 | 254 | 1.20E-09 |
| Glyur000134s00009748.1 | PF13812.1 | PPR_3 | 284 | 306 | 0.66 |
| Glyur000134s00009748.1 | PF13041.1 | PPR_2 | 307 | 355 | 1.20E-10 |
| Glyur000134s00009748.1 | PF01535.15 | PPR | 382 | 407 | 0.015 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.979 |
| SRR1783600 | control | 5.465 |
| SRR1783602 | moderate drought stress | 14.311 |
| SRR1811619 | moderate drought stress | 14.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.496 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.535 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.161 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.586 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.402 |
| SRR2868004 | Drought Stress (root) | 0.896 |
| SRR2967015 | Control (root) | 0.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.680 |
| SRR9715740 | Leaf | 2.705 |
| SRR9715741 | Leaf | 1.433 |
| SRR9715739 | Root | 0.993 |
| SRR9715742 | Root | 0.723 |
| SRR9715743 | Root | 0.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.313 |
| SRR8749028 | MeJA induced 9h | 1.890 |
| SRR8749029 | MeJA induced 9h | 1.485 |
| SRR8749030 | Uninduced | 2.731 |
| SRR8749031 | Uninduced | 1.954 |
| SRR8749032 | Uninduced | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.805 |
| SRR8400027 | Control - Root | 1.879 |