Gene detail

Gene detail information of Glyur000134s00009746

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48330.1	1.00E-134	Regulator of chromosome condensation (RCC1) family protein
NR	XP_004512057.1	0	PREDICTED: ultraviolet-B receptor UVR8-like [Cicer arietinum]
COG	YP_003951479.1	5.00E-37	regulator of chromosome condensation-like protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	3.00E-31	Ultraviolet-B receptor UVR8
trEMBL	tr\|I3SB19\|I3SB19_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK37461.1}

Sequence

Transcript Sequence

>Glyur000134s00009746.1
GTGGGGTGGATGGCAAATTCTTGGGGGTGTATTTGCCGACCACCGCAATGTTGTGGAGTAAAAAGTAAATCCAACGGGAATCTGGGACTGGAAGGGACAAAAGCAAGCAACTAGGNAAGCATGGCACCGCCAGAGTGAAAGAAATGTGGCGATCACGGGAGTTGTTGAGGAAGCTAAAAGCGGAAAGTGTTGTGAGGCGGAGATGGATGAGCACGGTGATGAGTTTCGGAGAAGGAAGCCATGGGGCTCTAGGATTGCCTACATCCACCGTTGGTATTGGAGGAGACGCATACGAGCCTACCCCCGTTCCTACTCTTCCCACCGACATTGCGAGCGTCCATGCGGGTCACTATCACTCCCTCGCCCTCACTTCCCAAGGCCANCTCTGGGCCTGGGGCAGAAACAACGAAGCCCAACTCGGCCGTGGCCTTTCCCCTAGAGAGTCATGGAATGAGCCGAAAATAGTAGAGGGACTAAAAAATGTGAAGGTGTGTGCTGCTTTTGCGTCCGGCGTCGTCTCTGCTGCGGTTGGAGACGACGGTTCTGTTTGGGTGTGGGGGAAATCGAAGCGCGGCCAGCTTGGGCTTGGGGAACACATAACCGAAGCCGTTGCACCTGCCAGAGTTGAAGCACTTTCCGGTGAAAACGTAGCAAAGGTCTCGTTTGGTTGGGGCCACGCTCTTGCTAAGACTGTGGATGGCAAGTTGTTTGGCTGGGGCTATTCGGCGGATGGAAGGANNGGGAAAATGGGGAATCGTTTGGAGGCATCTCCACTGGATTCCACGGAAGGAAATGACACGNAACTCACGAGTTCAGACCTGGAAGATGCTGAAAAGAGAGTCTTACAAGGAATGGAGAANGAGAACGACATGCCAATAGTATGGGAACCTCGGTTGGTGGAAGAACTCCGTGGTGTTCAAGTTGTGGACATTGCATGTGGCCTTGATCACTCTTTGGTCCTTTGCCGTGATGGTGCTCTCTTAAGTAGTGGGAGTAACGTGTATGGCCAGTTAGGGCGAGCTAGAGCAGATTTGGGTTTATTTCCTGTTGAGATGAGTTTCAGCCCAGTTTCTATAGCAGCAGGGCTTGGCCATTCTTTGGCAATATGCGAGCTCGATGAATCGGACGGTGGTGTTGGGACTACAAACATTGCTTCATGGGGATGGAACCAGAGCTCTCAGCTTGGGAGGCCAGGGCCTGGGAACCTCCCAGCCTTGATTGATGCATTGGCTGGGGAGAATCCTGTGTCGGTTTCAGCAGGGCGTGTGCATTCCATTGCTCTCACGTCAAAGGGGGAACTGTGGGTATGGGGATCGGGTAAAAATGGTAGGCTTGGATTGGCAAGTTCTGTTGACCAAGTTGAGCCGTTTTACCTTGATTCTTTAGAGGGTTTCCAGATTTTACAGGCCGTGTCTGGGTTTGATCATAATCTGGTGCTGGTTGCTGAATGATCTGGCTTCAACAAATACCTTGGTGCTAGGCTNGGAAAATTTAGTAAGAAAAACAGATGAGAAAATATCATAGGAAAGAATGTACAGGACAGTGTCTCTTTTAAGCATAAACTTGAAGGTAAGTTTATTCGTCTTGAAACAGATCTAAGTACNCCCTTGGTCCAAATGTCCGGTATGTAATATCAAATATGTTTTTTGTTTTGTTTGGAAGTCTTGTATGTTGCTTAAGAGTTGAGACTCTTACTTGATAAAAATAGTTTGATGGGTATGATGAAGTGTATTTAATCATGTATAAAGGTCAAGGATAGTATGATCATTACGAGANTGTTCTAATTAATAAGATCAAGGATAGAATGGGTTAAAGCAGGTGATTTTGTTTTTCAGTGGTCTTGACTTGATCGTGATGTATTTTGCAGACATGTTGGTCCAAATAACCGAAGGAATTTGAGTTTATAGTAATACTCATGGAAGTAACAAGAAAATAACGAATCATAATTTGGAAATTGAATTACAAGAAATCTTCGAAATCCTATTGTTTCCTCTTATTTTTCAACTCACAATTGAATNCCTTCTGCAACTTGCATGGGAAGGTGAATACAGAAAAATACAGTAAAAAAATTGAATACTGTTCAATTCATATTTTCTTTGGGTATTTTTTCACGGATGGCTAGCATGCTGGAAGGTCCTTTGGTGGTGGCAGAACAGATTGATCTTGTCCTGGTCCATCTTCCACAACGAAAGCCGTTTTCAACCCCCAACCAGTGTGCAGCTCCAAGTGACAATGCATGAACCAAACACCTGTACAATAGTATATACATGAAGATTCATGCCATGATATAGCAGAACATACCTTAAAAATTACAGAAGTTTAGGACGCCTTTAGACGTACCTGGATTATCTGCTCTAAAACGAATTGCTGTCCAACCACCTGTTGGAACCCCAACAGTGTTCCTCTCAACAGGATCTACCAAGTTGTAATTTTTGGGGTCTTTAGCAGGATCAAAATTACCAACACCAGTTCCAACAACAAAAAAGTTATAACCATGGAGATGGAATGGATGTGATTCAACTGTGAGGAGATTGGTGTCCTGCAAAACTAGCTCCACTGTAGAATTAAAGGCAATCTTGCTTACTCTTGTGCCTGTTAAAGTGGCAAGATTGGCGGTTAGTGGTGCACCAGTATAGTTGAAAGGAATTGGAGGGTGGTCAGGTAAATCAGCCCTGAAAACCCCATTGATGTTGAAGTAGTGAGCTTGGAGAAGGGCAATTTGAGGCATCACAAAAGATACATTGTTTAAGGAAGCAAGAAACCGGGTTCCATTGACACATGTGGGGCAAGCATTCTTGCCTAAACCGATAGTGTAAAAGAGGTTTCTATCAACTTTGAGAGGAACATTAGCAGGGTACTGAGCTGAGTTTAAGCTTAGGAGGTTCTTGTTGTAACTCAAAGCAAAACCTGTGTCATTGCTAGCAGGCAACTGTGGAAGGGTTGGGAGGACAGTGTTTGGGATGCCTTTGTATTGGAATATAGCTGTGGNGGTTTTGTTGTCAACTGCGATTGGAGCNTCCATAAAGGTCCTTGTAGCCATGAAGTATCTTCCAGCTACTTGGTTGGCTTTAACCAGAACGTTTGTGGTTTGACCAGGACCAATTNGTATGGCTTGAGTGGTGAATGGTTTTGTGTAAACAGCATCAACCTCCACTACTGTCATGTTGTGACCCGCAATGGCGAAGAAAAGCTCGTCATTGAGAGCAGCATTGATGATTCTCAGGAGGNAAGTCTTCCCTTGTTCTACCTCCATTGCAAATGTGTCTGAAAATTGAAGCAAAATGGCACTTTAAACAGAAGATTTCAGTCTTTTGAAACTATAACCAATAACCAAATGCTGGTAACTGTTCCTTTGCATTTAATACCAAACTTGGGCTAATTTTACTTACGCTTCTCAGAACATGGAAATAGTGGTCCTGGTTTCCCATTGATCGTATGTGCATCTGACATATTTGGTGGCAACCCCATTTTGTTCCCTTGCTTTTCAATCTCTTCCACGTCATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	16056	20001	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009746.1	PF13540.1	RCC1_2	62	89	4.00E-08
Glyur000134s00009746.1	PF00415.13	RCC1	132	181	1.30E-09
Glyur000134s00009746.1	PF13540.1	RCC1_2	260	289	2.90E-08
Glyur000134s00009746.1	PF13540.1	RCC1_2	368	395	1.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.790
SRR1783600	control	5.798
SRR1783602	moderate drought stress	15.100
SRR1811619	moderate drought stress	15.207

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.826
DRR006520	Root Summer glycyrrhizin high producing strain	20.729
DRR006521	Root Winter glycyrrhizin high producing strain	11.487
DRR006522	Root Winter glycyrrhizin high producing strain	11.287
DRR006523	Root Summer glycyrrhizin low producing strain	26.613
DRR006524	Root Summer glycyrrhizin low producing strain	26.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.003
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.757
SRR2868004	Drought Stress (root)	15.571
SRR2967015	Control (root)	14.682

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.778
SRR9715740	Leaf	3.183
SRR9715741	Leaf	2.850
SRR9715739	Root	6.969
SRR9715742	Root	9.678
SRR9715743	Root	7.484

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.488
SRR8749028	MeJA induced 9h	10.618
SRR8749029	MeJA induced 9h	8.143
SRR8749030	Uninduced	3.090
SRR8749031	Uninduced	1.473
SRR8749032	Uninduced	5.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.194
SRR8400027	Control - Root	9.526