Gene detail

Gene detail information of Glyur000134s00009744

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03260.1	0	laccase 11
NR	XP_003612037.1	0	Laccase-11 [Medicago truncatula]
COG	YP_005009977.1	4.00E-22	multicopper oxidase type 3 [Niastella koreensis GR20-10]
Swissprot	tr\|Q8VZA1\|LAC11_ARATH	0	Laccase-11 (Precursor)
trEMBL	tr\|G7KEX5\|G7KEX5_MEDTR	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur000134s00009744.1
ATGGCCTATCACATGATGAGCTTCCGCAGTCACACACCTTTGTTAATAATTCTTCTCTTCGGTTTTCTTGGCTTAGTCTCTTATCCAGTTGAAGCGGCAATAAAGAAATACCAATTTGATATTCAAATGAAGAATGTGAGTAGACTATGCCATGCAAAACCCATTGTAACAGTAAATGGGAGGTACCCAGGGCCAACTATTTATGTCAGAGAAGGAGACAGAGTGCAAGTCAATGTCACCAACCATGCAAAATATAACTTGTCAATTCACTGGCATGGACTTAAACAGTATCGTAATGGTTGGGCGGATGGACCAGCTTATATCACACAGTGTCCAATTCAAACCGGTNGCAGCTACACTTATGACTTCAACGTCACAGGGCAAAGAGGAACATTGTGGTGGCATGCTCATATTCTTTGGTTGAGGGCAACCGTGTATGGTGCAATTGGGAGTGGTGGCACAAGGACGTGGAAGAGGTTGAAAAGCAAGGGAACAAAATGGGACACATATGCAATGGAGGTTGAGAAGGGAAAGACTTACCTCCTGAGAATCATCAATGCTGCACTCAACGACGAGCTTTTCTTTGCCATAGCGGGTCACAACATGACAGTAGTGGAGGTTGATGCTGTTTACACAAAACCATTCACCACTCAATCCATACTAATTGGTCCTGGTCAAACCACAAACGTTCTGGTCAAAGCCAACCAAGTAGCAGGAAGATACTTCATGGCTACAAGGACCTTTATGGATGCTCCAATCGCAGTTGACAACAAAACCGCCACAGCTATATTCCAATACAAAGGCATTCCAAACACTCTCATCCCTTCTTTCCCTCTTCTCCCTTCTGCCAATGACACAGGTTTTGCTATGAGTTANAGCAAGAAATTGAAAAGCTTGAACTCTGCTAAGTACCCTGCTAATGTCCCTCTCAAAGTTGATCGAAACCTCTTTTACACTATCGGTTTGGGCATGAATCCTTGCCCCACTTGTGTCAATGGAACCCGGTTACTTGCTTCATTAAACAATGTCTCTTTTGTNATGCCACAAACCGCGCTTCTCCAAGCTCACTACTTTAACATCAAGGGGGTTTTCAGAACTGATTTCCCTGACAAGCCTTCAACTTCTTTTAACTATACTGGTGCACCACTAACGGCCAATCTTGGTACTTCAACGGGAACAAGAGTTAGCAAGATTGACTTTAATTCTACAGTGGAGCTAGTTTTGCAAGACACCAATCTCCTCACTGTTGAATCACATCCTTTCCATCTTCATGGGTATAACTTCTTTGTTGTTGGAACTGGTATTGGTAATTTTGATCCTGCTANAGACCCCAAAAATTACAACTTGGTAGATCCTGTTGAGAGGAACACTGTTGGGATTCAAGTGAAGAATGTGAGTAGACTGTGCCATGCAAAGCCCATTGTAACAGTAAATGNGAGGTTCCCAGGGCCAACTATATATGCCAGGGAAGGAGATAGAGTGTTGGTCAATGTCACAAACCATGCACAATACAACATGCATGGACTCAAACAATATCGTAATGGTTGGGCTGATGGACCAGCTTATATCACACAGTGTCCAATACAGACAGGAAGCAGCTATACTTACGAATTCAACGTTACTGGGCAGAGAGGAACACTATGGTGGCATGCACACATTCTGTGGCTGAGGGCCACTGTGTATGGTGCAATAGTAATCATGCCTAAACCAGGAACACCATTTCCTTTCCCACAACCGGCCAGAGAATTTGAAGTTCTCCTAGGTGAATGGTGGAACAATGACGTGGAAGAGATTGAAAAGCAAGGGAACAAAATGGGGTTGCCACCAAATATGTCAGATGCACATACGATCAATGGGAAACCAGGACCACTATTTCCATGTTCTGAGAAGCACACATTTGCAATGGAGGTAGAACAAGGGAAGACTTNCCTCCTGAGAATCATCAATGCTGCTCTCAATGACGAGCTTTTCTTCGCCATTGCGGGTCACAACATGACAGTAGTGGAGGTTGATGCTGTTTACACAAAACCATTCACCACTCAAGCCATACNAATTGGTCCTGGTCAAACCACAAACGTTCTGGTTAAAGCCAACCAAGTAGCTGGAAGATACTTCATGGCTACAAGGACCTTTATGGANGCTCCAATCGCAGTTGACAACAAAACCNCCACAGCTATATTCCAATACAAAGGCATCCCAAACACTGTCCTCCCAACCCTTCCACAGTTGCCTGCTAGCAATGACACAGGTTTTGCTTTGAGTTACAACAAGAACCTCCTAAGCTTAAACTCAGCTCAGTACCCTGCTAATGTTCCTCTCAAAGTTGATAGAAACCTCTTTTACACTATCGGTTTAGGCAAGAATGCTTGCCCCACATGTGTCAATGGAACCCGGTTTCTTGCTTCCTTAAACAATGTATCTTTTGTGATGCCTCAAATTGCCCTTCTCCAAGCTCACTACTTCAACATCAATGGGGTTTTCAGGGCTGATTTACCTGACCACCCTCCAATTCCTTTCAACTATACTGGTGCACCACTAACCGCCAATCTTGCCACTTTAACAGGCACAAGAGTAAGCAAGATTGCCTTTAATTCTACAGTGGAGCTAGTTTTGCAGGACACCAATCTCCTCACAGTTGAATCACATCCATTCCATCTCCATGGTTATAACTTTTTTGTTGTTGGAACTGGTGTTGGTAATTTTGATCCTGCTAAAGACCCCAAAAATTACAACTTGGTAGATCCTGTTGAGAGGAACACTGTTGGGGTTCCAACAGGTGGTTGGACAGCAATTCGTTTTAGAGCAGATAATCCAGGTGTTTGGTTCATGCATTGTCACTTGGAGCTGCACACTGGTTGGGGGTTGAAAACGGCTTTCGTTGTGGAAGATGGACCAGGACAAGATCAATCTGTTCTGCCACCACCAAAGGACCTTCCAGCATGCTAGCCATCCGTGAAAAAATACCCAAAGAAAATATGAATTGAACAGTATTCAATTTTTTTACTGTATTTTTCTGTATTCACCTTCCCATGCAAGTTGCAGAAGGNATTCAATTGTGAGTTGAAAAATAAGAGGAAACAATAGGATTTCGAAGATTTCTTGTAATTCAATTTCCAAATTATGATTCGTTATTTTCTTGTTACTTCCATGAGTATTACTATAAACTCAAATTCCTTCGGTTATTTGGACCAACATGTCTGCAAAATACATCACGATCAAGTCAAGACCACTGAAAAACAAAATCACCTGCTTTAACCCATTCTATCCTTGATCTTATTAATTAGAACANTCTCGTAATGATCATACTATCCTTGACCTTTATACATGATTAAATACACTTCATCATACCCATCAAACTATTTTTATCAAGTAAGAGTCTCAACTCTTAAGCAACATACAAGACTTCCAAACAAAACAAAAAACATATTTGATATTACATACCGGACATTTGGACCAAGGGNGTACTTAGATCTGTTTCAAGACGAATAAACTTACCTTCAAGTTTATGCTTAAAAGAGACACTGTCCTGTACATTCTTTCCTATGATATTTTCTCATCTGTTTTTCTTACTAAATTTTCCNAGCCTAGCACCAAGGTATTTGTTGAAGCCAGATCATTCAGCAACCAGCACCAGATTATGATCAAACCCAGACACGGCCTGTAAAATCTGGAAACCCTCTAAAGAATCAAGGTAAAACGGCTCAACTTGGTCAACAGAACTTGCCAATCCAAGCCTACCATTTTTACCCGATCCCCATACCCACAGTTCCCCCTTTGACGTGAGAGCAATGGAATGCACACGCCCTGCTGAAACCGACACAGGATTCTCCCCAGCCAATGCATCAATCAAGGCTGGGAGGTTCCCAGGCCCTGGCCTCCCAAGCTGAGAGCTCTGGTTCCATCCCCATGAAGCAATGTTTGTAGTCCCAACACCACCGTCCGATTCATCGAGCTCGCATATTGCCAAAGAATGGCCAAGCCCTGCTGCTATAGAAACTGGGCTGAAACTCATCTCAACAGGAAATAAACCCAAATCTGCTCTAGCTCGCCCTAACTGGCCATACACGTTACTCCCACTACTTAAGAGAGCACCATCACCTGATATATAANAATAAGGGTAAACAATACTTGATAAAAAGGGGGCAAAAAGAACATGCATATGTTATGTAATGAATAATGATTCTTGAATATCCATTCATTTCAAACACTCATCCAACATCTCTCCCTTCTTGTCGTGTCACTACGACCTGTCTATTACTTCTATCATTTTTCTTCTATCTCTCTGAAGATGTATAATGGATTTATGGTGTCCTAGAAACATTTTTCATAGGTAATGTAGATGAGTGTTTTCTACTTACGGCAAAGGACCAAAGAGTGATCAAGGCCACATGCAATGTCCACAACTTGAACACCACGGAGTTCTTCCACCAACCGAGGTTCCCATACTATTGGCATGTCGTTCTCNTTCTCCATTCCTTGTAAGACTCTCTTTTCAGCATCTTCCAGGTCTGAACTCGTGAGTTNCGTGTCATTTCCTTCCGTGGAATCCAGTGGAGATGCCTCCAAACGATTCCCCATTTTCCCNNTCCTTCCATCCGCCGAATAGCCCCAGCCAAACAACTTGCCATCCACAGTCTTAGCAAGAGCGTGGCCCCAACCAAACGAGACCTGTTCAATTAGAGAAACAAACAAAATAAGTTTTTTGACTATGATCTTGATGGCAAGGGGATCAAGTAAGCAAGCAAGTAAGTAAAGTACCTTTGCTACGTTTTCACCGGAAAGTGCTTCAACTCTGGCAGGTGCAACGGCTTCGGTTATGTGTTCCCCAAGCCCAAGCTGGCCGCGCTTCGATTTCCCCCACACCCAAACAGAACCGTCGTCTCCAACCGCAGCAGAGACGACGCCGGACGCAAAAGCAGCACACACCTTCACATTTTTTAGTCCCTCTACTATTTTCGGCTCATTCCATGACTCTCTACTTTCCATTCATTTTAATCACTTACTTATTAGGAATCAATCAATGAACATACATAAACACACAAACAAAAGGTAAGAATTTGCGTTACCTAGGGGAAAGGCCACGGCCGAGTTGGGCTTCGTTGTTTCTGCCCCAGGCCCAGAGNTGGCCTTGGGAAGTGAGGGCGAGGGAGTGATAGTGACCCGCATGGACGCTCGCAATGTCGGTGGGAAGAGTAGGAACGGGGGTAGGCTCGTATGCGTCTCCTCCAATACCAACGGTGGATGTAGGCAATCCTAGAGCCCCATGGCTTCCTTCTCCGAAACTCATCACCGTGCTCATCCATCTCCGCCTCACAACACTTTCCGCTTTTAGCTTCCTCAACAACTCCCGTGATCGCCACATTTCTTTCACTCTGGCGGTGCCATGCTTNCCTAGTTGCTTGCTTTTGTCCCTTCCAGTCCCAGATTCCCGTTG

Protein Sequence

>Glyur000134s00009744.1
MAYHMMSFRSHTPLLIILLFGFLGLVSYPVEAAIKKYQFDIQMKNVSRLCHAKPIVTVNGRYPGPTIYVREGDRVQVNVTNHAKYNLSIHWHGLKQYRNGWADGPAYITQCPIQTGXSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIGSGGTRTWKRLKSKGTKWDTYAMEVEKGKTYLLRIINAALNDELFFAIAGHNMTVVEVDAVYTKPFTTQSILIGPGQTTNVLVKANQVAGRYFMATRTFMDAPIAVDNKTATAIFQYKGIPNTLIPSFPLLPSANDTGFAMSXSKKLKSLNSAKYPANVPLKVDRNLFYTIGLGMNPCPTCVNGTRLLASLNNVSFVMPQTALLQAHYFNIKGVFRTDFPDKPSTSFNYTGAPLTANLGTSTGTRVSKIDFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPAXDPKNYNLVDPVERNTVGIQVKNVSRLCHAKPIVTVNXRFPGPTIYAREGDRVLVNVTNHAQYNMHGLKQYRNGWADGPAYITQCPIQTGSSYTYEFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKPGTPFPFPQPAREFEVLLGEWWNNDVEEIEKQGNKMGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVEQGKTXLLRIINAALNDELFFAIAGHNMTVVEVDAVYTKPFTTQAIXIGPGQTTNVLVKANQVAGRYFMATRTFMXAPIAVDNKTXTAIFQYKGIPNTVLPTLPQLPASNDTGFALSYNKNLLSLNSAQYPANVPLKVDRNLFYTIGLGKNACPTCVNGTRFLASLNNVSFVMPQIALLQAHYFNINGVFRADLPDHPPIPFNYTGAPLTANLATLTGTRVSKIAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGVGNFDPAKDPKNYNLVDPVERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPAC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	8132	19930	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009744.1	PF07732.10	Cu-oxidase_3	41	149	1.10E-41
Glyur000134s00009744.1	PF00394.17	Cu-oxidase	157	268	2.50E-34
Glyur000134s00009744.1	PF07732.10	Cu-oxidase_3	461	569	8.90E-36
Glyur000134s00009744.1	PF00394.17	Cu-oxidase	585	731	1.20E-41
Glyur000134s00009744.1	PF07731.9	Cu-oxidase_2	838	963	2.20E-39
Glyur000134s00009744.2	PF07732.10	Cu-oxidase_3	41	149	3.90E-42
Glyur000134s00009744.2	PF00394.17	Cu-oxidase	156	268	8.10E-35
Glyur000134s00009744.2	PF07731.9	Cu-oxidase_2	371	488	1.50E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.479
SRR1783600	control	2.487
SRR1783602	moderate drought stress	5.982
SRR1811619	moderate drought stress	5.812

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.465
DRR006520	Root Summer glycyrrhizin high producing strain	12.094
DRR006521	Root Winter glycyrrhizin high producing strain	5.614
DRR006522	Root Winter glycyrrhizin high producing strain	5.331
DRR006523	Root Summer glycyrrhizin low producing strain	14.320
DRR006524	Root Summer glycyrrhizin low producing strain	15.002
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.145
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.899

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.374
SRR2868004	Drought Stress (root)	12.220
SRR2967015	Control (root)	13.386

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.183
SRR9715740	Leaf	1.603
SRR9715741	Leaf	1.579
SRR9715739	Root	3.710
SRR9715742	Root	7.372
SRR9715743	Root	6.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.017
SRR8749028	MeJA induced 9h	6.766
SRR8749029	MeJA induced 9h	4.675
SRR8749030	Uninduced	1.834
SRR8749031	Uninduced	0.901
SRR8749032	Uninduced	2.217

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.060
SRR8400027	Control - Root	6.959