Gene detail

Gene detail information of Glyur000133s00010387

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G46264.1	2.00E-84	heat shock transcription factor B4
NR	XP_004501560.1	0	PREDICTED: heat stress transcription factor B-4-like [Cicer arietinum]
Swissprot	tr\|Q9C635\|HSFB4_ARATH	2.00E-114	Heat stress transcription factor B-4
trEMBL	tr\|G7J6F2\|G7J6F2_MEDTR	0	Heat shock transcription factor {ECO:0000313\|EMBL:AES73309.1}

Sequence

Transcript Sequence

>Glyur000133s00010387.1
CACACTCTCACTCACTTCCCTTTGCACTCCTAGTCATAGAACCTCTCTCTCTCTCTCTCTCTCTGTTTCTTATTCTACCTGACCTCTCCTCTTCCTCTTCTTGGTGTGGATTGAATCGAAGATCAGTGAAAGATGGCTCTTCTTCTAGACAACTGTGAAGGCATATTGCTCTCATTAGACTCACACAAATCGGTTCCCGCACCATTCCTCACCAAGACNTACCAACTGGTGGACGATCCCACAACAGATCACATAGTCTCTTGGGGTGAAGACGACACCACCTTCGTCGTTTGGCGTCCCCCAGAGTTCGCCAGAGACCTTCTCCCCAACTACTTCAAGCACAACAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGAAAGATTGTACCAGACAGATGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAACATTTGCTGTGTGAGATCCATAGAAGAAAAACAGCTCAGCCTCAACAACCAGCAGGCATGANCATGAACCATATTCAGCACCACCACCACCATTCTTCACTTGGAGGAGTCAACAATATTCCTCCTTCTTTCTTTCCCTTCTCAAGCAGAGTTAGCATCTCTCCCCCTAATGACTCAGATGAACACGCCAATTGGTGTGACTCTCCACCACTCACTTCTTCCCCAATAAGAGGAGCCACATCCATATCAGTAGCCAATAATAATAATAACTACAACAGTTCTGTCACTGCGCTTTCGGAGGACAATGAAAGACTGAGGAGAAGCAACAACATGCTAATGTCAGAGCTTGCTCATATGAAGAAGCTTTACAACGATATCATCTATTTCGTTCAGAACCATGTCAAGCCAGTGACTCCAAGCAACTCTTATAACCCTTCTTCTCTGCTACTCTGCAATAATACACCACAACCAACTGCGCCTGGTAATAATGTTTCAATGGTGCAAAGGCCAATGAACCAGCTTCTTGGGTATTATTCAAATAACCCTAAGCAACACCCTCAACTTCAAACTCAAACCCATCATCATCAATATCATGCAATGAACTCTTCACCCACCAACACCAACACATCGAGGAGTTCTATAACAATTGTTGAAGGGCCTAGCAGTACCAATAATTGCAAGACTAAGCTTTTTGGGGTGTCTCTGCAATCCAAGAAGAGAGTGCACCCTGAGTGTGGATCTAATAACAACCCCATTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACCTTGGTTTGAATCTCATGCCTCCCTCCACTTGTTAGTATCTGAAATATCCCCAAGCTAGAGCTAATAGCTACTTAATTTCTTTAATTTGCTTACTTAATTGCTTGTTTATTTTTCTTTATTTTTAAAAAAGAAATTTGAAGTCCTTCAAGTTTTGAGTATCGGAGGAGGCAGATGAATGATATTGATGGAAACATGTGTGTGTGTGTGAGTGCGTGTGTGAGACTGTTTTTGTGATTCTGTGTACATATGACTTAGTGCCTGAGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	211047	212675	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF
EAR motif-containing Proteins	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010387.1	PF00447.12	HSF_DNA-bind	25	117	2.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.315
SRR1783600	control	19.341
SRR1783602	moderate drought stress	19.306
SRR1811619	moderate drought stress	19.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.070
DRR006520	Root Summer glycyrrhizin high producing strain	18.957
DRR006521	Root Winter glycyrrhizin high producing strain	0.146
DRR006522	Root Winter glycyrrhizin high producing strain	0.143
DRR006523	Root Summer glycyrrhizin low producing strain	11.100
DRR006524	Root Summer glycyrrhizin low producing strain	10.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.834
SRR2868004	Drought Stress (root)	4.607
SRR2967015	Control (root)	7.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.296
SRR9715740	Leaf	0.209
SRR9715741	Leaf	0.280
SRR9715739	Root	3.503
SRR9715742	Root	4.700
SRR9715743	Root	6.681

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.116
SRR8400027	Control - Root	12.728