Gene detail information of Glyur000133s00010382 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G45207.2 | 1.00E-97 | Remorin family protein |
| NR | XP_007160859.1 | 0 | hypothetical protein PHAVU_001G022700g [Phaseolus vulgaris] |
| Swissprot | tr|P93788|REMO_SOLTU | 7.00E-11 | Remorin |
| trEMBL | tr|V7CTZ3|V7CTZ3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32853.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00133 | 161512 | 166130 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000133s00010382.1 | PF03763.8 | Remorin_C | 497 | 596 | 6.20E-25 |
| Glyur000133s00010382.2 | PF03763.8 | Remorin_C | 468 | 567 | 5.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.992 |
| SRR1783600 | control | 18.307 |
| SRR1783602 | moderate drought stress | 10.740 |
| SRR1811619 | moderate drought stress | 10.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.279 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.770 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.711 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.235 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.478 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.811 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.015 |
| SRR2868004 | Drought Stress (root) | 10.742 |
| SRR2967015 | Control (root) | 12.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.369 |
| SRR9715740 | Leaf | 1.950 |
| SRR9715741 | Leaf | 2.354 |
| SRR9715739 | Root | 4.344 |
| SRR9715742 | Root | 7.327 |
| SRR9715743 | Root | 4.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.553 |
| SRR8749028 | MeJA induced 9h | 14.418 |
| SRR8749029 | MeJA induced 9h | 12.429 |
| SRR8749030 | Uninduced | 4.675 |
| SRR8749031 | Uninduced | 2.848 |
| SRR8749032 | Uninduced | 1.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.694 |
| SRR8400027 | Control - Root | 10.885 |