Gene detail

Gene detail information of Glyur000133s00010377

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45230.1	5.00E-55	Protein of unknown function (DUF3223)
NR	XP_003603048.1	2.34E-95	Protein DCL [Medicago truncatula]
Swissprot	tr\|Q42463\|DCL_SOLLC	1.00E-74	Protein DCL, chloroplastic (Precursor)
trEMBL	tr\|G7J6E2\|G7J6E2_MEDTR	9.00E-96	DCL protein {ECO:0000313\|EMBL:AES73299.1}

Sequence

Transcript Sequence

>Glyur000133s00010377.1
CTCTGATTGGGCTAACTCTCCCCATTTTGTGTTATATATACAATAACAATATAGACCCAAAAAAAATACACTAATAAATAAATAATACAATAATAAAAATAAAAACAAAAATGGAAAGAAATTGGTGGCTTTTCTTTATCCAGCAGCTGGCAGAGAGGGCGAGCGAGGGCGCTCCACCTTGCAGAATTTGATAACGCGAGTCGCGANTGAGTGACTGAGTTGAGCGGAATTCAAAAGGAAACACCAAACCAAACAAAATGTCACAATATAATTGAGACAATTGACACACATTGAATGTGGTTTTTGCAATTTGCTGATAGAGATATGGCTGCTGCTTCTTTTTCTTCTTCACTCTCCAAAACCAAAACCACAACGCCGCTGCATGTTGTCCAATCCCTCCCAAACCCTCCATCTCTCCGCTCCCCTCGCTTGATTCTGCCTCTCCGTTTCAACTGGAACGCTTCTCTGTTTCTGCTCCACTCTCGTCTCTCTCCTCTCAAAGCTGCTTCTGCTTCTTCCGACGGCGACAATTTGCTGAGGAAGCCACTCCTTTCTCAACGGAAGGGTGTTTTGGAGGAACAACAGGATGGCTATTCCTATGAAGAAGAAGAAGAAGAAGAAGAAGAGGACACTACTGAAGAGGATTTATGGGTTGACTGGGAAGACCAGATTTTGGAGGACACTGTTCCTTTGGTTGCCTTTGTCAGGACTATTCTTCATTCTGGACAATATATCAATGGAGAAAGACTGAGTCCGGAGCATGAGAAAACCATTCTCGAGAAGCTGCTTCCTTTTCATCCAGAGTATGAGAAAAAGATCGGATGTGGAATCGATTATATAACGGTTAATTATCATCCTAATTTTGATCGCTCTAGGTGTTTGTTCATAGTGCGGCAAGATGGAGAGCTGGTTGACTTTTCATATTGGAAATGCATAAAGGGTTTGATCAGAAAGAACTATCCATTATATGCAGACAGTTTCATTCTCAGGCACTTCAGGAAGAAAAGTCGGAATCTGTGAAGTTAACACCATCTTCTGCTGGCTGTACCATTTCCTTTTCCCTTTTTTCAATTAAAAATTACCCCATTCAGTTTTCGTGTTCTCTTGTTGCTGGTAGCTAGCATACTTTTTTAATGGTTTGAGATAAAAAACGGGTATNGAAACTTCTGGAGTTCAGAAGAGTGGTTAGCATTTAACGACTCACTACAAGAGATCGTCATAGATGCTGGAAAATGACTCCATTTTGATTATTTTTTGGTACAACCCCATTTTGATTATTGACAATATGTCACTNTTCGTAGTGGTTTATTTAATAATATGGGAATGTAGATTATGTATATAGATCTTGATAATTACATTCCTTTCAGTTAAATTAAATTTTCAACTTTGAGAAATTGCAGTTTAGTTTATTTATAGAAAATTGCTGAAAAGTACGAAACGAATTTCGTACTATGTGTGGTGTCTTAACTTTTATGTGCTTCATTCGAAGGTTTGGACAATTCTTCATGGTTTCCGGTTGGTGTGTGTGGCAGCAAGGATACTATAAACGTATTCAGATTGAAACAGATTTTCTGTTGGCTTATCCGTTACTGGAGCAAGGTTGCTCTGTGCATAATCCAAGTTACCCCTTGGTTTCTCAAATTCGGTCGCTTTTTAAGCTTGGGATTCGTCATATTTTCTGATAAACAAATAAGGTTGCTCATGTTCTGGCTACGCTTAGGCTGTTTATCCTCCTAGCCGTAGGATTTTTTATTTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	133187	137685	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009308 amine metabolic process

molecular_function

GO:0005507 copper ion binding

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010377.1	PF11523.3	DUF3223	138	214	7.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.318
SRR1783600	control	8.355
SRR1783602	moderate drought stress	8.192
SRR1811619	moderate drought stress	8.159

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.961
DRR006520	Root Summer glycyrrhizin high producing strain	9.937
DRR006521	Root Winter glycyrrhizin high producing strain	16.115
DRR006522	Root Winter glycyrrhizin high producing strain	15.820
DRR006523	Root Summer glycyrrhizin low producing strain	9.408
DRR006524	Root Summer glycyrrhizin low producing strain	9.020
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.665
SRR2868004	Drought Stress (root)	9.294
SRR2967015	Control (root)	9.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.879
SRR9715740	Leaf	29.939
SRR9715741	Leaf	14.396
SRR9715739	Root	4.691
SRR9715742	Root	6.283
SRR9715743	Root	5.596

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.408
SRR8749028	MeJA induced 9h	4.496
SRR8749029	MeJA induced 9h	4.080
SRR8749030	Uninduced	3.294
SRR8749031	Uninduced	1.217
SRR8749032	Uninduced	2.345

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.248
SRR8400027	Control - Root	7.549