Gene detail

Gene detail information of Glyur000133s00010375

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17650.1	1.00E-75	Polyketide cyclase / dehydrase and lipid transport protein
NR	XP_004501565.1	1.63E-155	PREDICTED: coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like [Cicer arietinum]
COG	YP_006985183.1	3.00E-26	hypothetical protein B932_2704 [Gluconobacter oxydans H24]
trEMBL	tr\|Q00M76\|Q00M76_SOYBN	5.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G04150.1}

Sequence

Transcript Sequence

>Glyur000133s00010375.1
AAAAAAACTAGTCATGCATACCCCATAAGGGAGTTTGGCTTCGTTTTAAAAATGGAAAAGGAAGATATTGGAGGCGGAGGCGAAGTTGATAAGTGATAACAAACAGGTTTCCCCGTATTGTTGGTGGCAATGTCCACGTGTGTGGTCAACTACTGACGGCGTCGCAAGGCGGTTCACGTAATCGCGTCTGGTGTATGTATGAGTCATGCGAAGAACTAAAATGGTCTAAACAACCACGTGGCCTTTAGATGTTTCGATTGTTAAAAAAGGAATCGTCGTATTCAACGAACATCCCACCAAATCTGCAAACCTATTGCATTCCCTTTCTCGATTTCGCGTCTCCTTTCGTATCCTAGGGTTTCACATTCTTCCGATTTCGAATCCCCAATCTGTGATTCTCATCCGATTAGTCCACTTGTATTGTAATTGCAAAAAGCTGCATAACTCTGGTTTCCTCACCGTTCGAAAATTTAATTAGGTTTGGTATCCCCAATTTTGTTGGAGTTGACAATGCCGCCATTTTTGTCGACCACGAGGGCACTTCGCTCGTTGGCAACGCGCAAAAGTGGATTGAGTCAATTGATTAGGTCTAACAAGAGCATTGAGAATCTGGATGGATGCCGATGTCTTTCCACCATTGCATGCAGGTCCACCACCCGTCAGATTCAGCCCTTCGGCTCTCGCATTGGTTTTCCCCCCTTTATGGGAGGTTCGTGTAATAACAGTAATAATGCTGTCCAATCGAGGCAATTCCTTGGTTGTGGAGATGGTGAAGAAGGTGTTCTGTCCAAAACTTACGAGGAGAGGCGCGTTTTGGGGTACTCTCCGGAGCAATTATTTAATGTTGTTGCAGCTGTTGATTTCTATCATGGTTTTGTCCCGTGGTGTCAAAGGTCGGAGATACTTAAACATCATCCGGATGGATCATTTGATGCTGAGTTGGAGATTGGATTTAAATTTCTTGTTGAAAGCTATGTTTCTCATGTTGAGTTGGACAGACCAAAGCGTATAAAGACAGCTGTGTCAAATAGTACCCTGTTTGACCATTTGATAAACATATGGGAATTTAATCCTGGCCNGGTTCCAGGAACTTGCGATCTCTATTTCTTGGTGGATTTTAAGTTTCAGTCTCCACTATACAGACAGATTGCATCGATGTTCTTTAAGGAGGTAGCCTCCAGGATGGTTAGTTCATTTAAAGAGCGTTGCCGCGTGATATATGGACCGGAAGTCCGGGTCCTTGAAAAATCATATGGAGGAAGGGCATAGAGTATTTTTTTTTTCTTCTGCTCGTCAGTTTCTTGTCTTGAACATAGCTAAGGTCAATTTGCAGTTTCTGCATTAATTGGGCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	124534	127511	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010375.1	PF03364.15	Polyketide_cyc	103	230	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.230
SRR1783600	control	5.217
SRR1783602	moderate drought stress	4.796
SRR1811619	moderate drought stress	4.329

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.887
DRR006520	Root Summer glycyrrhizin high producing strain	8.111
DRR006521	Root Winter glycyrrhizin high producing strain	3.558
DRR006522	Root Winter glycyrrhizin high producing strain	3.607
DRR006523	Root Summer glycyrrhizin low producing strain	3.452
DRR006524	Root Summer glycyrrhizin low producing strain	3.712
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.616
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.115
SRR2868004	Drought Stress (root)	12.087
SRR2967015	Control (root)	10.588

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.070
SRR9715740	Leaf	14.810
SRR9715741	Leaf	13.192
SRR9715739	Root	4.076
SRR9715742	Root	4.614
SRR9715743	Root	3.557

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.159
SRR8749028	MeJA induced 9h	14.084
SRR8749029	MeJA induced 9h	7.884
SRR8749030	Uninduced	13.306
SRR8749031	Uninduced	34.072
SRR8749032	Uninduced	14.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.079
SRR8400027	Control - Root	9.759