Gene detail

Gene detail information of Glyur000133s00010374

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07700.1	3.00E-49	Thioredoxin superfamily protein
NR	XP_004501566.1	7.52E-125	PREDICTED: thioredoxin-like 4, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_001088193.1	9.00E-06	thioredoxin [Clostridium difficile 630]
Swissprot	tr\|Q9C5C5\|TRL4_ARATH	5.00E-71	Thioredoxin-like 4, chloroplastic (Precursor)
trEMBL	tr\|I1K7Z7\|I1K7Z7_SOYBN	1.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G04300.1}

Sequence

Transcript Sequence

>Glyur000133s00010374.1
CTTGTCCTGATTCGAAGTTTTGTTGTGCGCTGTGCTTCACAGATATCGCAAAAGCGCGCTTTTGGATTTCAGTTTCACCATCCCCCCGCCCGGAAAACGAACGAACGGGAATCAGGGATGCTGTTTCTGCAAAACTGCATATTATGATCTCTCAAAGACTNTGTGTTTGACTTCCTGCGACTGGGAGAGTTTGAAATAGTTAACATTAATGTCCATTGAATCACAACCGTTTATAATCTTTTTATTCCATCCGAATAGTTCACATGTTTAGATATTTTGTTTGTAATCACTCTAGCTTTGGAAATTCATTCTCGTCACCGGTCATTGTTTATCATTTTACTCGATGATGATCCTATATTGGCACCTAGCTTATAATGAGTCGATTGAAACCTAGTTCTACATTCTATGAGGCACCATCGTCTACCAGTTAACTCATCAAAATTCCTCTCCTAAATTCTTTATTACTAGCAGTACAAGATCTAGTTTTGAAAAGATGCCGCAGGTTGTCATTCATGGGCAGAATATTCTGCATAGCAAGTCCTTCGCCAGTGTGAGACTAGAGCTATACTTGCACAAACCAGTTGAGTCTAGAATTCCCCATGTAGTTTTCAGCTTGGTTCCTAGGCTCAGTCATGGCAAGCAGTGTCTTGGTGGGACAAAAATTGAACCTATTATGAAAATGAGGCACACTTTCTGCCCTGGTAGGAATAGGATAAGAGTTGCAAATGAATCTCAAGAAGATTTGCCCGATGAAGATGATGACCTCTGTCCCGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAGTTCTGCAGAATTCTGGATAAGGCCAAAGGAACTGGATCTTTGGTTGTGGTAGATTTCTTCCGCACCTCTTGTGGAAGCTGCAAGTATATAGAGCAGGGTTTTGCTAAGTTGTGCAAGAAATCTGGTGACCATGATGCTCCANTAATCTTTCTAAAGCATAATGTAATTGATGAGTATGATGAACAATCCGAGGTTGCTGATCGACTTAGAATCAGGGCGGTGCCTCTCTTCCACTTCTACAAAGATGGGGAACTGTTGGAAGCATTCCCAACCAGAGACAAAGAGAAGATTGTTGCAGCCATCCTCAAGTACTCATCTCTTGAAGCCGAAGATATTTTGAGTTAACTTCAAGGGATGGTGTCACTGCTGTGCGGGGAATTAGTCTTTGTTTGTACGTGATGATATTCATTAAACAACATTCTGTATAGTCAAAATAAAATACCTATACTCCTGTCAGCCTAATTTACTTTGTTTTTGTTGGGAAGTATCCAGTGGAGAGTTTAATGTCCATGATGATTGATGGAACATCCCTTTCCTTTCCTCCAGTGGTTTGGCTTCCCAAGTTCCCTTGAGTGCTAGTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	121071	123898	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010374.1	PF00085.15	Thioredoxin	102	207	4.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.028
SRR1783600	control	0.031
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.007

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.077
DRR006520	Root Summer glycyrrhizin high producing strain	0.076
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.833
SRR2868004	Drought Stress (root)	2.217
SRR2967015	Control (root)	1.610

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.178
SRR9715740	Leaf	23.365
SRR9715741	Leaf	13.074
SRR9715739	Root	0.000
SRR9715742	Root	0.089
SRR9715743	Root	0.088

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.894
SRR8749028	MeJA induced 9h	7.638
SRR8749029	MeJA induced 9h	4.956
SRR8749030	Uninduced	4.811
SRR8749031	Uninduced	1.807
SRR8749032	Uninduced	3.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.828
SRR8400027	Control - Root	0.734