Gene detail

Gene detail information of Glyur000133s00010371

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G33400.1	Vacuolar import/degradation, Vid27-related protein
NR	XP_004501569.1	PREDICTED: protein CYPRO4-like [Cicer arietinum]
Swissprot	tr\|P40781\|CYPR4_CYNCA	Protein CYPRO4
trEMBL	tr\|I1JTJ3\|I1JTJ3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G04120.1}

Sequence

Transcript Sequence

>Glyur000133s00010371.1
CGAAACGACATTGAGTTTTCTACTAACCGTTGCAACCGCATCTGAATCGCATGGTGGTGGGTGGTGGGTAGGGTCCACACCACAAACGGGTTCCCTTACTTTTCAAAAACCCTAGCCAGAACGAAAACGCTCCGTTTTAAAATTCGAACTTGGCGCTCTCCGCATCCGCGAATCCTCCTATTCCTCCTCCTCGTCATTTCCCAATCCGATCCCATCTTTCGGATCCTCCGAAGTGAAAAAAGGAATAACAATGGGCCACGCTCAAAGTCGCGAGGATTTGCTACATAGTTCAGACTCAGAACAAGAATCAGAAACAGAAGAAACAGAAGAAGGGAACTACGAAGACGCGACGAGCGAGGGAGGTTCAGAGCAGAGAGTGAAAACCCCNTCATCACTCGATGACGTTGAGGCCAGACTCAAAGCCCTCAAGCTCAAATACTCTTCCAACAACAACAACCCTAACGTCAATAACGCCGTTAAGCTTTACCTCCACGTCGGCGGCAACACCCCCAAAGCCAAATGGGTCACCTCTGACAAACTCACCACTTACTCCTTCGTCAAAACAAACAGACTCGACGGAGACAGCGACGGCGAAGATGACGGCGACGGTGACGAAGACGACGAAAAATCCCCGTGGGTTCTTAAGGTNGGTTCCAAAATCNGATCCAAGGTTGCTTTGGAGATGCAATTGAAAACCTTCNCCGACCAGCGGCGCGTGGACTTCGTCGCGAGTGGCGTGTGGGCGATGAAATTCTTCACGGANCAAGACTACAATGCTTTTGTGACGCAGTTTCAGAACTGTATGTTCGAGAACACGCACGGGGTTGAGGCCACAGAGGAGAACAGGGTGAAGGTGTATGGTAAGGATTTCATTGGGTGGGCGAAACCCGAAGCCGCAGATGATTCCATGTGGGAGGATGCAGAGGAAAGCTTCTCCAAGAGCCCTGGTTCCGCCACGCCCGTGCGACCCACACAAGATCTGAGGGAAGAGTTTGAGGAAGCTGCAAACGGTGGAATACAGAGCCTGGCGCTGGGTGCTTTGGACAACAGTTTCTTAGTCAGCGACACTGGAATTCAGGTAGTGAAGAATTTCGCACATGGGATACATGGAAAAGGTGCTTTTGTTAACTTTGGTGGTGGATATCAAAATGGGTCAAAGTCAACCTCTTCCACTTTGGTGCATTCAACACCCAAAAAAACGCTTCTTATGAAGGCTGAGACAAGCATGCTTCTGATGAGTCCATTGGGTGGTGGAAAGCTTCATTCAACTGGGCTTCACCAGCTTGATATTGAAACTGGGAAGGTTGTGACTGAGTGGAAATTTGGAAAAGATGGCACTGATATCACAATGAGGGATATCGCCAATGATAGTAAAGGCGCTCAATTGGATCCTTCGGGTTCAACTTTTCTAGGTTTGGATGATAACAGGCTGTGTAGGTGGGATATGCGTGACCGCCATGGAATAGTTCAGAATCTCGCTGACTCCAACACTAANGTGAATACCCCTGTGTTGAATTGGGCACAAGGGCATCAATTCTCAAGGGGGACTAATTTTCAATGCTTTGCTACTACTGGGGATGGTTCAATTGTGGTTGGTTCATTGGATGGGAAGATTCGACTCTATTCGATCAACTCCATGAGGCAGGCAAGGACGGCTTTTCCTGGCCTTGGATCGCCTGTTACTCATGTTGATGTTACTTTTGATGGAAAGTGGATTGTGGGCACCACGGATACCTACTTGGTTGTTATCTGTGCCGTCTTTACTGATAAAGATGGGAAGGCAAAAACTGGTTTTGCTGGACGCATGGGGAATAAGATTGCTGCTCCTAGGTTGCTCAAGCTCACCCCTCTGGATTCACATTTAGCTGGAGTGAATAACAAATTCCGTAATGCTCAGTTTTCGTGGGTGACGGAGAATGGGAGGCAGGAGCGACATATAGTAGCTACNGTGGGGAAGTTCAGTGTGATATGGAACTTTCAACAGGTCAAGGATGGTTCTCATGAGTGCTACCGTAACCAACAGGGTCTAAAGAGCTGCTACTGCTACAAGATAGTGCTTAGGGATGATTCCATTGTTGATAGCCGATTTATGCATGACAAGTTTGCAGTCTCTGATTCTCCTGAGGCTCCATTGGTAATTGCCACTCCAATGAAAGTTAGCTCATTCAGCATATCCAGCAGGCGATGATAATTCTGGACACAACCGTTGACCTAATTGTCAGCTCTTGTAGCTTAATTAATGACATTTCAGACGTTTCATTTGAAAACTTTTCAATTGTATGTAGGATGTTTAAGATGTAGTAAATCAACAATGGTTGTCAAATTGTACTAGTGTATTCAGTTTTTTAAGCTAATGCTTGTTGGTCCCATACTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	111527	115392	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010371.1	PF08553.5	VID27	149	588	1.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.152
SRR1783600	control	4.969
SRR1783602	moderate drought stress	4.049
SRR1811619	moderate drought stress	3.939

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.225
DRR006520	Root Summer glycyrrhizin high producing strain	6.123
DRR006521	Root Winter glycyrrhizin high producing strain	16.836
DRR006522	Root Winter glycyrrhizin high producing strain	16.621
DRR006523	Root Summer glycyrrhizin low producing strain	2.668
DRR006524	Root Summer glycyrrhizin low producing strain	2.802
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.431

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.469
SRR2868004	Drought Stress (root)	16.462
SRR2967015	Control (root)	18.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.162
SRR9715740	Leaf	1.843
SRR9715741	Leaf	2.719
SRR9715739	Root	5.452
SRR9715742	Root	5.719
SRR9715743	Root	6.190

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.845
SRR8749028	MeJA induced 9h	22.515
SRR8749029	MeJA induced 9h	14.074
SRR8749030	Uninduced	4.374
SRR8749031	Uninduced	2.879
SRR8749032	Uninduced	3.603

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.561
SRR8400027	Control - Root	15.736