Gene detail

Gene detail information of Glyur000133s00010370

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45474.2	3.00E-81	photosystem I light harvesting complex gene 5
NR	AFK47516.1	3.13E-160	unknown [Lotus japonicus]
Swissprot	tr\|P10708\|CB12_SOLLC	2.00E-63	Chlorophyll a-b binding protein 7, chloroplastic (Precursor)
trEMBL	tr\|I3T4S4\|I3T4S4_LOTJA	1.00E-160	Uncharacterized protein {ECO:0000313\|EMBL:AFK47516.1}

Sequence

Transcript Sequence

>Glyur000133s00010370.1
CTCCCCTCCAAACTCCGAGTCGTACCTTCCGAGTCATACCGTAAAAGGTACATCAGACAGAACAAATTGGGCGAAGTTAACCACTTATTTTACTTGATGATGAAGTAACATCTGACTTCGTTTATTTCTCACCAAAAAAATCTGACTTCGTTTATTTTAGAAATTCGGATANCATAAAGTTTTGATTTCTGGAGTGGCCGCGAAACCGCTGTTTCTAGTTTGGAGAAAATGGTTACAGTGAAGGCTTAAGAAGCAGACATTTGTTATCTGCTACCTGCTCTCATTGGATAAGTGGGCCCGCCCATGTTTTCGTATTGCAATTTTCTTTTCCTTTAAACTAGAACAACATAAATATTAAATANCATGCGTATGTGGTTGTGAAAGTAGAAATTTTGAGCACTGGATTTGTCCTCCTAGCTAGGATAGGAGCAGATAATAATCAGAAAAACAATGGCCGCAGCAATAGCAAGAAGCTTCCATATTCAGCCACGCTCTTTATTCAACAGTAATACCATCGTTAAATGTTCACCAGCAGCAGGAGGATACTCATCATCATGGCTCGGGGGGCCTGCTGCTGCAAGATATAGGCGAACTTGTGTAGCAGCGCAACAGCGACCCACNTGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGGTTCGACCCACTTGGGCTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTACAAGCAGAGTTAGTTCATGCTCGCTTTGCAATGCTTGGGGTCTTTGGAATTCTAGTCACAGATCTACTTCGGGTCACAGGACTTAGTAAGATACCGGTTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCCAACACAGAGACGCTCCTCATTGTTCAACTACTTTTGATGGGGTTTGCTGAAACAAAAAGGTATATGGATTTCGTTAGTCCTGGATCTCAAGCTAAAGAAGGGTCCTTCTTTGGATTGGAAGCTTCACTAGAAGGCTTAGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGACTCTAAGCTTAAAGAGATCAAGAACGGGCGACTTGCAATGGTGGCAATGCTTGGCATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGACAACCTTGTGGAGCATCTCTCCAATCCATGGCACAAAACTATTATTCAGATCCTTGCAAGTTCCACGTTGGGAAATGACTCAAAATCCGATCACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	107955	110400	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010370.1	PF00504.16	Chloroa_b-bind	64	232	8.20E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.166
SRR1783600	control	0.127
SRR1783602	moderate drought stress	0.552
SRR1811619	moderate drought stress	0.379

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.188
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	1.432
DRR006522	Root Winter glycyrrhizin high producing strain	1.304
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	66.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.723

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.398
SRR2868004	Drought Stress (root)	1.545
SRR2967015	Control (root)	1.570

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.881
SRR9715740	Leaf	56.913
SRR9715741	Leaf	32.726
SRR9715739	Root	0.531
SRR9715742	Root	0.383
SRR9715743	Root	0.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.672
SRR8749028	MeJA induced 9h	10.707
SRR8749029	MeJA induced 9h	12.816
SRR8749030	Uninduced	28.277
SRR8749031	Uninduced	28.596
SRR8749032	Uninduced	23.454

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.934
SRR8400027	Control - Root	0.953