Gene detail information of Glyur000133s00010366.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42870.1 | 8.00E-131 | phosphatidic acid phosphohydrolase 2 |
| NR | XP_003603031.1 | 0 | Phosphatidate phosphatase LPIN3 [Medicago truncatula] |
| Swissprot | tr|Q9FMN2|PAH2_ARATH | 4.00E-149 | Phosphatidate phosphatase PAH2 |
| trEMBL | tr|G7J6C5|G7J6C5_MEDTR | 0 | LNS2 (Lipin/Ned1/Smp2) protein {ECO:0000313|EMBL:AES73282.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00133 | 86833 | 93408 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15728 | LPIN | EC:3.1.3.4 | Glycerolipid metabolism | map00561 |
| Glycerophospholipid metabolism | map00564 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000133s00010366.1 | PF04571.9 | Lipin_N | 1 | 94 | 4.40E-32 |
| Glyur000133s00010366.1 | PF08235.8 | LNS2 | 663 | 818 | 1.00E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.889 |
| SRR1783600 | control | 3.899 |
| SRR1783602 | moderate drought stress | 4.051 |
| SRR1811619 | moderate drought stress | 3.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.632 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.654 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.769 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.809 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.769 |
| SRR2868004 | Drought Stress (root) | 21.927 |
| SRR2967015 | Control (root) | 25.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.465 |
| SRR9715740 | Leaf | 7.048 |
| SRR9715741 | Leaf | 9.740 |
| SRR9715739 | Root | 2.463 |
| SRR9715742 | Root | 6.784 |
| SRR9715743 | Root | 5.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.223 |
| SRR8749028 | MeJA induced 9h | 19.194 |
| SRR8749029 | MeJA induced 9h | 9.806 |
| SRR8749030 | Uninduced | 13.041 |
| SRR8749031 | Uninduced | 21.463 |
| SRR8749032 | Uninduced | 14.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.875 |
| SRR8400027 | Control - Root | 21.318 |