Gene detail information of Glyur000133s00010362 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47380.1 | 0 | Protein phosphatase 2C family protein |
| NR | XP_003528265.1 | 0 | PREDICTED: probable protein phosphatase 2C 12-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FX08|P2C12_ARATH | 0 | Probable protein phosphatase 2C 12 |
| trEMBL | tr|I1K7Y8|I1K7Y8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G04210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00133 | 69846 | 74926 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000133s00010362.1 | PF00481.16 | PP2C | 55 | 280 | 2.60E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.726 |
| SRR1783600 | control | 16.974 |
| SRR1783602 | moderate drought stress | 6.932 |
| SRR1811619 | moderate drought stress | 6.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.586 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.147 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.121 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.615 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.476 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.892 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.476 |
| SRR2868004 | Drought Stress (root) | 24.154 |
| SRR2967015 | Control (root) | 17.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.486 |
| SRR9715740 | Leaf | 5.363 |
| SRR9715741 | Leaf | 6.319 |
| SRR9715739 | Root | 7.298 |
| SRR9715742 | Root | 16.291 |
| SRR9715743 | Root | 15.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.256 |
| SRR8749028 | MeJA induced 9h | 39.445 |
| SRR8749029 | MeJA induced 9h | 52.015 |
| SRR8749030 | Uninduced | 56.014 |
| SRR8749031 | Uninduced | 26.912 |
| SRR8749032 | Uninduced | 23.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.712 |
| SRR8400027 | Control - Root | 43.854 |