Gene detail

Gene detail information of Glyur000133s00010355

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47480.1	1.00E-100	alpha/beta-Hydrolases superfamily protein
NR	XP_003528252.1	5.53E-179	PREDICTED: probable carboxylesterase 2-like [Glycine max]
COG	YP_004642863.1	3.00E-24	alpha/beta hydrolase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q9SX78\|CXE2_ARATH	1.00E-132	Probable carboxylesterase 2
trEMBL	tr\|I1K7Y1\|I1K7Y1_SOYBN	2.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G04140.1}

Sequence

Transcript Sequence

>Glyur000133s00010355.1
AAAAAAAAAATAAGAGCGGTGAGGGGAAGAGCTAGATCTAAGCAACACGTGCCGTTTATTTCCCCTGCATTTCCTCCGCCATTAAAACCAAAGGGTGCGATTCATAAAACTCTTGAGCGTGGAAGTCCTTCCTTTCCTTTTTCGTTATCCCTTCAACTCTCCTNCCCCCTTCTCTCTGTTTTCCCCCCAAATGCATCCTCCAACCAATCCACAAATCCTCATCGATGTCCCTCCTTACCTTCGAGTACACAAAGACGGCACCGTAGAGAGAATCGCCGGCATCGAAGTTGTTCCTGCGGGCTTCGATCCCGAAACCAACGTCGTCTCCAAAGACATCATCGTCATCCCTGAAACTGGTGTCACAGCAAGACTCTACCGTCCCAATTCCAATTCCACCCCAAAAACCAAAAAGCTCCCTTTACTCATCTACTTCCACGGTGGAGCCTATTGCATCGCCTCTGCCTCCTTTCCCGGTTACCACAACTCCCTCAACAAACTCGTGTCCGAATCCAACGTTGTTGCTGTCTCCGTCAACTACAGGTTAGCGCCAGAACACCCACTCCCAACCGCATACCAAGATTCTTGGGATTCACTTGAATGGGTCGCATCTCATGCTACCCAAGAAGGTAAAGGGCACGAAAACTGGCTCAGTGATGACAAAGTTGACTTTAAAAGAGTGTTCTTGGCGGGTGATAGTGCAGGTGCCAACATCGCACACTACATGGCCTTAAAGTTACAACAACCCACAAAGGATTTCGATTTCAAGGTAGCGGGTCTTGTGATGGTGAATCCTTATTTCTGGGGGAAGGAACCCATTGGTGTGGAGATTGGTGATGAAGAGAGGAAGAGAATGGTGGATAAGTGGTGGGAATTTGTGTGTCCTTCTGATAAAGGGTGTGATGATCCTTTGATTAACCCCTTTGTGGAGGAAGCTCCGGGTCTTGAAGGTGTGGGTTGTGACAGGGTGCTTGTTACCGTTGCGGAGAAAGACATACTGAGGGAAAGGGGGAAGCTTTATCACAAACGGTTGGTGAATAGTGGTTGGAAAGGAACGGCTGAGTTTCATGAGACTCAAGGGGAGGATCACGTCTTTCACATTTTCAACCCTGACTCTGATAAAGCCAAGAGCTTGATTAAACGCATAGCTGCTTTCATCAATCAACAGTGAATAGATCTTTGAATTTGAGGTTCTCATATTTCACTGTCTGAAATCCATAAAACATGTTTCGCTTGCCTGTTCCCAATTATGGTTTATATGCTTTATGACGTGGCAATATTGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00133	33168	34640	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000133s00010355.1	PF07859.8	Abhydrolase_3	78	302	1.70E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.705
SRR1783600	control	52.937
SRR1783602	moderate drought stress	65.538
SRR1811619	moderate drought stress	65.462

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.400
DRR006520	Root Summer glycyrrhizin high producing strain	10.483
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.406
DRR006524	Root Summer glycyrrhizin low producing strain	2.408
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.627
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	282.171
SRR2868004	Drought Stress (root)	415.942
SRR2967015	Control (root)	383.401

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.891
SRR9715740	Leaf	107.901
SRR9715741	Leaf	80.409
SRR9715739	Root	141.088
SRR9715742	Root	43.403
SRR9715743	Root	54.979

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.626
SRR8749028	MeJA induced 9h	2.484
SRR8749029	MeJA induced 9h	2.013
SRR8749030	Uninduced	3.175
SRR8749031	Uninduced	0.685
SRR8749032	Uninduced	1.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	169.993
SRR8400027	Control - Root	103.818