Gene detail information of Glyur000133s00010353 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26560.1 | 6.00E-116 | phospholipase A 2A |
| NR | XP_003603015.1 | 0 | Patatin-like protein [Medicago truncatula] |
| COG | YP_003640930.1 | 1.00E-30 | patatin [Thermincola potens JR] |
| Swissprot | tr|O48723|PLP2_ARATH | 4.00E-142 | Patatin-like protein 2 |
| trEMBL | tr|G7J6A9|G7J6A9_MEDTR | 0 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00133 | 23414 | 25726 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000133s00010353.1 | PF01734.17 | Patatin | 41 | 201 | 9.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.975 |
| SRR1783600 | control | 0.904 |
| SRR1783602 | moderate drought stress | 1.532 |
| SRR1811619 | moderate drought stress | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.264 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.298 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.506 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.471 |
| SRR2868004 | Drought Stress (root) | 3.340 |
| SRR2967015 | Control (root) | 1.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.819 |
| SRR9715740 | Leaf | 5.597 |
| SRR9715741 | Leaf | 62.605 |
| SRR9715739 | Root | 5.327 |
| SRR9715742 | Root | 12.502 |
| SRR9715743 | Root | 12.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.333 |
| SRR8749028 | MeJA induced 9h | 4.999 |
| SRR8749029 | MeJA induced 9h | 0.616 |
| SRR8749030 | Uninduced | 283.416 |
| SRR8749031 | Uninduced | 120.327 |
| SRR8749032 | Uninduced | 33.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.610 |
| SRR8400027 | Control - Root | 5.441 |