Gene detail information of Glyur000133s00010351 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26560.1 | 2.00E-147 | phospholipase A 2A |
| NR | XP_003603015.1 | 0 | Patatin-like protein [Medicago truncatula] |
| COG | YP_006866470.1 | 5.00E-45 | patatin-like phospholipase [Psychroflexus torquis ATCC 700755] |
| Swissprot | tr|O48723|PLP2_ARATH | 0 | Patatin-like protein 2 |
| trEMBL | tr|G7J6A9|G7J6A9_MEDTR | 0 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00133 | 19436 | 21802 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000133s00010351.1 | PF01734.17 | Patatin | 23 | 229 | 2.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.181 |
| SRR1783600 | control | 1.265 |
| SRR1783602 | moderate drought stress | 1.270 |
| SRR1811619 | moderate drought stress | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.119 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.494 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.451 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.917 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.255 |
| SRR2868004 | Drought Stress (root) | 5.570 |
| SRR2967015 | Control (root) | 3.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.837 |
| SRR9715740 | Leaf | 10.505 |
| SRR9715741 | Leaf | 97.832 |
| SRR9715739 | Root | 9.900 |
| SRR9715742 | Root | 26.730 |
| SRR9715743 | Root | 26.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.112 |
| SRR8749028 | MeJA induced 9h | 15.477 |
| SRR8749029 | MeJA induced 9h | 1.977 |
| SRR8749030 | Uninduced | 517.908 |
| SRR8749031 | Uninduced | 278.739 |
| SRR8749032 | Uninduced | 47.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.361 |
| SRR8400027 | Control - Root | 9.920 |