Gene detail

Gene detail information of Glyur000132s00015952.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18750.2	2.00E-72	with no lysine (K) kinase 6
NR	XP_003623589.1	1.73E-120	With no lysine kinase [Medicago truncatula]
COG	YP_001710557.1	1.00E-11	serine/threonine-protein kinase [Clavibacter michiganensis subsp. sepedonicus]
Swissprot	tr\|Q9SCU5\|WNK5_ARATH	4.00E-80	Probable serine/threonine-protein kinase WNK5
trEMBL	tr\|W9QUX5\|W9QUX5_9ROSA	2.00E-127	Putative serine/threonine-protein kinase WNK5 {ECO:0000313\|EMBL:EXB42368.1}

Sequence

Transcript Sequence

>Glyur000132s00015952.1
ATGGAATTGTCTGATGCAATGAACACAAGTACAACCACGTACAAGGGGAGATTCTGCACTGCTGGTGGGGCTAAGGCTCCGCTTGGTTATGTTGAAACTGATCCATCTGGTCGATATGGGCGTTTCAGGGACATTCTGGGAAGAGGAGCCATGAAGACTGTGTATAGGGCGTTTGATGAGTTCTTAGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTGGGTGATGTCTGTCATTCACCAGAGCAAATTCAGCGCCTCTATTCAGAGGTTCATCTCCTTAAGCACCTCGACCACAAATCCATGATGATCTTCTATGGTTCTTGGATTGATGTCAATGCCAAAACCTTCAACTTCATCACCGAATTGTTCACCTCAGGCACCCTTNGAGAGTATAGGCAGAAGTATAAGAGAGTAGATCTCAGAGCAATGAAGAAATGGGCACGCCAGATTCTAAGTGGTTTGGAGTATTTACACAGCTACAATCCTCCTGTAATACATAGAGACCTCAAGTGTGACAATATCTTTGTCAATGGCCACATGGGGCAGGCACACCAGAGTTCATGGCTCCAGAACTTTATGAAGAGAAATACAATGAGCTTAATCCAAGATTTGGAAGCCCGGAGGTTCGTGGGAAAGTGTTTGGCACATGTCTCAGAGAGACCATCAGCAAAGGAGCTATTGTTGGACCCCTTTTTAGCCACGGAATTGCCAACCACACCATTATCTACAAATCAAACTGTTAACCTTAATAATTCCACTGCAGAAGTTGCCAATGAGAATCTTTCTTTAGGTGATCCAACAATGAGTAGAGATATGACAATCACCGGGTCAATGAATGAAGAGGATAGGACAATTTTCCTTAAAGTGCAGATATCTGACGAAATAGGGCAAATAAGACATATATTNTTTCCATTTGACACAAAAAAGGACACTGCTATTGATGTGGCGATGGAGATGGTACAAGAGCTTGAAATTAGCCACTTGGAACCATTGGAGATTGCTGCAATGATAGATCATGAGATAGCAGCTTTAGTTCCAACTTGGAATATGGATCAGGGGGGCANGTGTCAGCATCAACGACAGCACAGCTTTAACTATGAAGAAGATGAGGATGTCAATAACCATAATCCTTATTTCTTCTTATCATCTTCTCCATCTTCCCCTCATGGTTCTCTCCCAAAGTCTGGTTCCTCCTCCAAGACCCAATTCCGTGCGAACCATGCCACATTCACTCAAGAATGGCCTCAAGATGTATTATTATTTATGAACGACGATGCAAGCTCTCTAAGCTCAATGAACTCCTACAAGTGTTCCAATTTCCAATACTACGACTCGGGCAATAATGAAAGTGAGCATGGCCCAACAGTTGGAGCTGAATTACACAAGCAGCCCAAGTGCACAATAGAAGCTAGGAATTTAGCCAAACAGTACTTTAATTGGTACCCGACAACAACAATGGACTCTTGCGGTTGCAGATGTGGTGGTGGGTCGTCATTGAGGCCAACGAGGATTCGTTCAAACGTGGAGGATCGGAGGAGCATGCAGCTTCGGCGGTCACTACTGTTGGGAGAGATGTACAAGTACAAGACACGGATGTTCAACACTGTTGGGGCCGTTGAGGGCATTGGGTTTCAGCATATTCCAGATAGAGGTCGAAGCTTCCTACAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00132	173647	178068	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.5.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000132s00015952.1	PF00069.20	Pkinase	43	178	8.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.087
SRR1783600	control	0.098
SRR1783602	moderate drought stress	0.268
SRR1811619	moderate drought stress	0.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.071
DRR006524	Root Summer glycyrrhizin low producing strain	0.066
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.981
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.853

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.409
SRR2868004	Drought Stress (root)	0.352
SRR2967015	Control (root)	0.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.254
SRR9715740	Leaf	2.214
SRR9715741	Leaf	2.593
SRR9715739	Root	0.278
SRR9715742	Root	0.037
SRR9715743	Root	0.073

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.169
SRR8749028	MeJA induced 9h	0.138
SRR8749029	MeJA induced 9h	0.166
SRR8749030	Uninduced	0.082
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.060

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.121
SRR8400027	Control - Root	0.056