Gene detail information of Glyur000132s00015937 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08740.1 | 1.00E-73 | elongation factor P (EF-P) family protein |
| NR | KHN40629.1 | 6.97E-106 | Elongation factor P [Glycine soja] |
| COG | YP_007083167.1 | 4.00E-71 | translation elongation factor P [Pleurocapsa sp. PCC 7327] |
| trEMBL | tr|I1N388|I1N388_SOYBN | 3.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G44620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00132 | 96236 | 100685 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000132s00015937.1 | PF08207.7 | EFP_N | 23 | 58 | 1.30E-15 |
| Glyur000132s00015937.1 | PF01132.15 | EFP | 69 | 120 | 1.00E-20 |
| Glyur000132s00015937.1 | PF09285.6 | Elong-fact-P_C | 128 | 183 | 9.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.454 |
| SRR1783600 | control | 3.958 |
| SRR1783602 | moderate drought stress | 4.046 |
| SRR1811619 | moderate drought stress | 3.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.407 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.850 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.343 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.783 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.582 |
| SRR2868004 | Drought Stress (root) | 16.677 |
| SRR2967015 | Control (root) | 11.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.828 |
| SRR9715740 | Leaf | 43.885 |
| SRR9715741 | Leaf | 26.601 |
| SRR9715739 | Root | 3.734 |
| SRR9715742 | Root | 7.540 |
| SRR9715743 | Root | 6.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.311 |
| SRR8749028 | MeJA induced 9h | 15.129 |
| SRR8749029 | MeJA induced 9h | 30.230 |
| SRR8749030 | Uninduced | 31.686 |
| SRR8749031 | Uninduced | 48.130 |
| SRR8749032 | Uninduced | 65.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.219 |
| SRR8400027 | Control - Root | 15.458 |