Gene detail information of Glyur000132s00015936 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16640.1 | 1.00E-40 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003623623.1 | 0 | Pentatricopeptide repeat-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9FMD3|PP389_ARATH | 7.00E-44 | Pentatricopeptide repeat-containing protein At5g16640, mitochondrial (Precursor) |
| trEMBL | tr|G7KY53|G7KY53_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES79841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00132 | 93310 | 95061 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000132s00015936.1 | PF13041.1 | PPR_2 | 195 | 244 | 1.00E-10 |
| Glyur000132s00015936.1 | PF01535.15 | PPR | 273 | 298 | 0.0026 |
| Glyur000132s00015936.1 | PF13041.1 | PPR_2 | 306 | 354 | 1.90E-15 |
| Glyur000132s00015936.1 | PF01535.15 | PPR | 380 | 410 | 0.00035 |
| Glyur000132s00015936.1 | PF01535.15 | PPR | 435 | 451 | 0.19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.682 |
| SRR1783600 | control | 3.699 |
| SRR1783602 | moderate drought stress | 4.509 |
| SRR1811619 | moderate drought stress | 4.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.652 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.143 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.776 |
| SRR2868004 | Drought Stress (root) | 6.067 |
| SRR2967015 | Control (root) | 7.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.679 |
| SRR9715740 | Leaf | 1.910 |
| SRR9715741 | Leaf | 1.828 |
| SRR9715739 | Root | 1.702 |
| SRR9715742 | Root | 3.266 |
| SRR9715743 | Root | 3.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.038 |
| SRR8749028 | MeJA induced 9h | 0.842 |
| SRR8749029 | MeJA induced 9h | 0.573 |
| SRR8749030 | Uninduced | 0.354 |
| SRR8749031 | Uninduced | 0.604 |
| SRR8749032 | Uninduced | 1.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.260 |
| SRR8400027 | Control - Root | 4.338 |