Gene detail

Gene detail information of Glyur000132s00015932

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01890.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003533657.2	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max]
COG	YP_004775215.1	8.00E-54	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|I1L703\|I1L703_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G41110.1}

Sequence

Transcript Sequence

>Glyur000132s00015932.1
CAAACAGTAGAAAAAACTTTCTCTGCTACGAACACATGGCACAAACACACAAACACNCTCTTTCTCTCTCTATTTCTCTGTCTTTGAAGTTGGAAGCTTTAAATGCTTCACTTTACTCTCTCTGACACTACTAACCAGAAGGCATAGAAGCCTTGGAATAGAGAACAACCACTNTTATTATTTATGCTCTTTCTCTCTCATACACACCCTTTTCACCCTCTTCACTCTTCAGCCCAACCCACCACTATTAATGGCTTCTCAACCCCCGAGGCTTCTTCCTCCTACTGTTATTTCTTTATAGCCTCTCTACTCCTTGCCGTTCCTTTCGCCGCTTTCTCTGCGGAATCAAATATCAAATATAAAAAAAAAATCAAATTTTTCTTCTTCTCATTTCATAAGCTCCAAAAAGCAAAGGAAAACAAAAACAAAATCAAATTTTTATTTTTTTTACTATTCCCTCCAGCCTTTATATTTCTTATTTTTTTGCTTATAAAATTTCATTGTTCTATCTTCATCTAAGTTCTAAGTGGGAACAATAACAAACACGATCATCTATCTATGAGTGTGGGTGTTTTTCAATTCCTTCTTGAAGAATGGAGGGGATTTTGAAATTCTGAAACAGGGAAAGCCAAAAGTGAATTTCCTGGACTTACTACTTTACTTTTGTTTTTTTCTTTTCATCCTCACATGGTTTTTGTCTAATCCCTCCTCCTTTTTTTTGGGTTCCTCTTTCCCCTTTTGTTTCTTTCAACTCTTCTCTTTTTGTTTATTATTATATCCAGTGAGATTTGGATACTTACAACTTCTGCTTCCATTCTGTGTCCTTTCTATTGCTACTGTCATGTGTCTCCTGCTGAGAAGAAACTTCCCCTCCTCCTNTGTGTGTTTGTGGAAATGATTGTGTTGTTGTTAAGGGATAGAACTTTGTGGAAATTCATGAGGAGAAGCTGTTCCTTTTGAAGTTTGATGCATTGTTACTCAATTATGAAGATGATGCAATTCAGAATATGTTTGTTGTTTCTGATTCTTTTAGCTCCAATTCTACNACCAGTGCTCTCTGTGGACCCTGTTTTCAATGATGACATCTTGGGGTTGATTGTGTTCAAGGCTGGTTTACAAGACCCAAAGCACAAGCTCTCATCTTGGAATGAAGATGACAACAGTCCNTGCAACTGGGAAGGTGTAAAATGTGACCCTTCCAACAACAACAGGGTCACTTCACTTGTCCTTGATGGGTTCTCCCTTTCTGGGCATGTTGATAGAGGCCTCTTGAGGTTACAGTCCCTTCAAATTCTCTCACTTTCTGGTAACAACTTCACAGGTTCCATAAACCCTGATCTCCCAAGACTTGGGGGCTTGCAAGTTGTTGACTTGAGTGACAACAACCTCTCTGGGACAATCCCAGAAGGGTTCTTCCAACAATGTGGATCTCTTAGAACAGTTTCCTTTGCCAACAACAACCTCACAGGTAAGATTCCTGATTCCTTGAGTTCATGTTCCACATTGAAAGCTGTTAACTTCTCCTCTAATCAACTTCATGGGGAATTGCCACCTGGGGTGTGGTACTTGAGGGGTCTACAGTCACTTGATCTGTCAAATAACTTGTTGGAGGGAGAGATTCCTGAAGGGATTCAGAATCTGTATGATATGAGGGAGTTGAGTCTACAGAATAACCGTTTCACTGGAAAGCTTCCTGGTGATATTGGAGGGTGCATAGTGTTGAAATCACTTGACTTGAGTGGTAATTTTCTCTCTGGGGGACTTCCTCAGTCAATGCAAAGACTCACCTCATGCACTTCACTCAGTTTGCAGGGAAATTCATTCACAGGAAGCATTCCTGATTGGATTGGAGACTTGAAAGATCTAGAGATATTGGATCTTTCTGCAAATAGATTCTCTGGTTGGATTCCAAAATCATTTGGGAATCTAGACTCACTGCATAGGTTAAATTTGTCCAGGAATCAGTTGACAGGAAACTTGCCTGATTCAATGGTGAATTGTATTAAGCTTTTGGCTCTTGATATCAGCCACAATCAGTTGGCTGGTTATCTTCCTTCATGGATTTTTAGGATGGGGTTACANAGCATCTCTCTTTCTGGGAACAGCTTCAGTAGTACTAAGGGAAATTACCCTTCACTGAAGTCAACACCTGCATCTTATCATGGTCTTGAGGTTTTGGATTTGTCCTCCAATGCATTCTATGGTGAGCTTCCATCTGGTATTGAGGGTCTCAGTAGCCTGCAACACTTGAATATGTCCACCAACAACATCTCTGGTTCTATTCCTGTGGGATTAGGACAACTCAAATCTTTATACATTGTTGACTTGAGTCACAACAGGCTTAATGGAAGCATACCTAATGAAATAGAAGGGGCAATTTCACTCACTGAACTGAGGCTACATATGAACTTCCTTGGTGGGAGAATTCCATCCCAAATTGAGAAGTGTTCATCTTTAATATCTTTGGTTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTAAAGCCATTGCAAACCTAACCAATCTTCAGTATGTAGATTTGTCATGGAATGAACTCTCTGGAAATTTACCCAAGGAGCTTACAAATCTTTCCCATCTTTTATCATTTAATGTATCCTACAACCACCTTCGAGGTGAGTTACCAGTGGGTGGCTTCTTCAACACCATCTCCTCCTCATCGGTCACCGGCAACTCATTGTTGTGTGGTTCTGTTGTCAACNACTCCTGCCCATCTGTTCATCCAAAACCTATTGTCTTGAACCCCAATTCTTCTAGTTCCAACTCCAGCATTTCCTCGCAAAGCCATCGGCATAAGATCATACTCAGTATCTCTGCTCTTATTGCTATTGGAGCGGCTGCTTTTATTGCCATCGGTGTAGTGGCTATTACTGTTCTAAATATCCACGTGCGATCTTCAATGGAACGTTCTGCTGCCCCGTTTGTGTTCTCTGGTGGTGAGGACTATAGCAATTCGCCGGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGAAGGAGCACACAATCTTCTCAATAAAGACAGCGAAATAGGCCGTGGTGGATTTGGGGTTGTTTATCGCACTTTCCTTCGAGANGGGCACGCTGTTGCGATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTCGAGGGGGAAGTGAAAAGGCTTGGGAAGATCAGGCACNAGAATCTCGTGGCACTTGAAGGTTACTATTGGACTTCATCCTTGCAGCTTCTCATTTACGAGTACCTATCCAGAGGGAGTTTGCACAAGCTTCTACACGANGATAGTAGCAAAAGCGTCTTGTCTTGGCGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCGCATTTGCACGAAATGAACACAATCCACTACAATCTCAAATCAACCAATGTCCTGATCGATTGTTCCGGTGAGCCGAAAATTGGAGACTTTGGCTTGGTGAAACTGCTGCCAATGCTGGACCATTGTGTGTTGAGCAGCAAGATTCAGAGTGCGCTCGGATACATGGCTCCGGAGTTCGCGTGCCGCACGGTCAAGATAACCGAGAAGTGCGATGTGTACGGTTTTGGGATCCTGGTTTTGGAGGTGGTGACAGGGAAAAGACCTGTGGAATACATGGAGGATGATGTGGTGGTTCTTTGTGACATGGTGAGGGGTGCATTGGAGGAAGGAAAAGTGGAGCAATGTGTTGATGAGAGGCTACTTGGTAATTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGCTTAATTTGTGCATCACAAGTGCCATCAAACCGTCCTGATATGGCTGAGGTAATCAACATATTAGAGTTAATCCAGTGCCCTTCAGAAGGACAAGAGGAATTAGAATGAGTTTTGTTGCATTGAGAAACAAACAAAACAGNACATATTGTGGTAGTACCTGGTGAAGAACAATCCAGTTTTTAAAAAAGAGCTACTATACAAGCAAAAGAAGAATATTTCAGTCAATTTGTTCCCAACTTATGTTCTTT

Protein Sequence

>Glyur000132s00015932.1
MHCYSIMKMMQFRICLLFLILLAPILXPVLSVDPVFNDDILGLIVFKAGLQDPKHKLSSWNEDDNSPCNWEGVKCDPSNNNRVTSLVLDGFSLSGHVDRGLLRLQSLQILSLSGNNFTGSINPDLPRLGGLQVVDLSDNNLSGTIPEGFFQQCGSLRTVSFANNNLTGKIPDSLSSCSTLKAVNFSSNQLHGELPPGVWYLRGLQSLDLSNNLLEGEIPEGIQNLYDMRELSLQNNRFTGKLPGDIGGCIVLKSLDLSGNFLSGGLPQSMQRLTSCTSLSLQGNSFTGSIPDWIGDLKDLEILDLSANRFSGWIPKSFGNLDSLHRLNLSRNQLTGNLPDSMVNCIKLLALDISHNQLAGYLPSWIFRMGLXSISLSGNSFSSTKGNYPSLKSTPASYHGLEVLDLSSNAFYGELPSGIEGLSSLQHLNMSTNNISGSIPVGLGQLKSLYIVDLSHNRLNGSIPNEIEGAISLTELRLHMNFLGGRIPSQIEKCSSLISLVLSHNKLTGSIPKAIANLTNLQYVDLSWNELSGNLPKELTNLSHLLSFNVSYNHLRGELPVGGFFNTISSSSVTGNSLLCGSVVNXSCPSVHPKPIVLNPNSSSSNSSISSQSHRHKIILSISALIAIGAAAFIAIGVVAITVLNIHVRSSMERSAAPFVFSGGEDYSNSPANDPNYGKLVMFSGDADFAEGAHNLLNKDSEIGRGGFGVVYRTFLRXGHAVAIKKLTVSSLIKSQEDFEGEVKRLGKIRHXNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHXDSSKSVLSWRQRFKIILGMAKGLAHLHEMNTIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDERLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVINILELIQCPSEGQEELE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00132	68423	72662	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000132s00015932.1	PF08263.7	LRRNT_2	37	76	7.40E-12
Glyur000132s00015932.1	PF00560.28	LRR_1	106	127	0.12
Glyur000132s00015932.1	PF13855.1	LRR_8	131	190	2.40E-09
Glyur000132s00015932.1	PF00560.28	LRR_1	204	225	0.037
Glyur000132s00015932.1	PF13855.1	LRR_8	300	358	2.50E-09
Glyur000132s00015932.1	PF13855.1	LRR_8	400	459	2.40E-07
Glyur000132s00015932.1	PF13855.1	LRR_8	472	531	5.10E-09
Glyur000132s00015932.1	PF07714.12	Pkinase_Tyr	698	906	2.30E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.973
SRR1783600	control	2.986
SRR1783602	moderate drought stress	3.085
SRR1811619	moderate drought stress	3.063

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.171
DRR006520	Root Summer glycyrrhizin high producing strain	9.001
DRR006521	Root Winter glycyrrhizin high producing strain	0.826
DRR006522	Root Winter glycyrrhizin high producing strain	0.752
DRR006523	Root Summer glycyrrhizin low producing strain	7.523
DRR006524	Root Summer glycyrrhizin low producing strain	7.478
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.575
SRR2868004	Drought Stress (root)	6.880
SRR2967015	Control (root)	7.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.898
SRR9715740	Leaf	1.336
SRR9715741	Leaf	1.244
SRR9715739	Root	2.036
SRR9715742	Root	7.862
SRR9715743	Root	6.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.293
SRR8749028	MeJA induced 9h	1.778
SRR8749029	MeJA induced 9h	1.345
SRR8749030	Uninduced	1.725
SRR8749031	Uninduced	2.919
SRR8749032	Uninduced	1.763

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.180
SRR8400027	Control - Root	7.650