Gene detail

Gene detail information of Glyur000132s00015927

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52850.1	2.00E-84	vacuolar sorting receptor homolog 1
NR	XP_004492565.1	1.27E-128	PREDICTED: vacuolar-sorting receptor 1-like [Cicer arietinum]
Swissprot	tr\|P93026\|VSR1_ARATH	1.00E-100	Vacuolar-sorting receptor 1 (Precursor)
trEMBL	tr\|V7B6G2\|V7B6G2_PHAVU	6.00E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESW12071.1}

Sequence

Transcript Sequence

>Glyur000132s00015927.1
CTTTCCCATTTTTTTCCATTTTGGTGCTTTAATTTTTCAATTTTGAAAAAGAATTGTCTTGATTTCCATCTATATAAAATCATAGATGGATTGGCAACTGACTCATTGAAATTGAATCTTGTCCGGAAGCTAATGATTTTGGTGATTATTCTTCGCAGACATGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAAATTTCTAATATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTGTTGTACAAAATGTGAAGTTTGTTGGTGATGGATATACCCACTGTGAAGCTTCAGGAGTCTTAAGGTGTGAAGTCAACAATGGAGGTTGTTGGAGGGGAGCCCAAGGTGGCAGGGTATACTCTGCTTGCCATGATGACTATAGAAAAGGTTGTGAGTGTCCACCTGGGTTCAGAGGTGATGGAGTCCTGTTATGTGAAGATATTGATGAGTGCAAAGAGAGATCNGCCTGCCAATGCCCACAGTGCAAATGCAAAAACACCTGGGGGAGTTACGAGTGCAGTTGCAGTAGTGGTTTGTTCTACTCGCGCGAAAATGACGTGTGTATTGGTAGATATACTGCCTCGATGAATATTTGGATGATTATCCTCATCTTGGTGGTTGCTGCTTCNGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGACTCTGAGATACGGGCAATTATGGCCCAATATATGCCCCTGGATAACCAACCTGAGATCTCTAATCAAGTTCATCATGATATCTAGAAGATGTTGCCAATCCTTTTTCTATGAGAAGATTAATCTGCTGCAACCTTAACAGCTAAACAAAGACAAGTGGTACCTGAGGCTCCCGACAGCATGCTTACTTAGCATATTCATCCTATCTCACACGTCTCTCTCTCCTAGCGGCTGTTTTGTTTTTTTTAGTTATTTTATCTTTGTAAAGTTCAAACCAATTGGGTTGTGTCGTTGTGACATTATCCTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00132	48325	50716	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000132s00015927.1	PF07645.10	EGF_CA	103	144	1.70E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	69.626
SRR1783600	control	69.666
SRR1783602	moderate drought stress	67.595
SRR1811619	moderate drought stress	67.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.038
DRR006520	Root Summer glycyrrhizin high producing strain	40.961
DRR006521	Root Winter glycyrrhizin high producing strain	26.917
DRR006522	Root Winter glycyrrhizin high producing strain	26.559
DRR006523	Root Summer glycyrrhizin low producing strain	30.798
DRR006524	Root Summer glycyrrhizin low producing strain	30.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.247
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.156

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.553
SRR2868004	Drought Stress (root)	22.016
SRR2967015	Control (root)	21.548

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.068
SRR9715740	Leaf	33.124
SRR9715741	Leaf	33.416
SRR9715739	Root	44.872
SRR9715742	Root	66.111
SRR9715743	Root	65.089

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.684
SRR8749028	MeJA induced 9h	6.589
SRR8749029	MeJA induced 9h	4.795
SRR8749030	Uninduced	18.863
SRR8749031	Uninduced	15.014
SRR8749032	Uninduced	13.750

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.006
SRR8400027	Control - Root	29.819