Gene detail information of Glyur000132s00015926 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52850.1 | 6.00E-91 | vacuolar sorting receptor homolog 1 |
| NR | XP_004492565.1 | 2.29E-127 | PREDICTED: vacuolar-sorting receptor 1-like [Cicer arietinum] |
| Swissprot | tr|P93026|VSR1_ARATH | 2.00E-109 | Vacuolar-sorting receptor 1 (Precursor) |
| trEMBL | tr|G7KY61|G7KY61_MEDTR | 2.00E-126 | Vacuolar sorting receptor {ECO:0000313|EMBL:AES79849.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00132 | 46189 | 46872 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.301 |
| SRR1783600 | control | 23.238 |
| SRR1783602 | moderate drought stress | 19.143 |
| SRR1811619 | moderate drought stress | 20.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.144 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.926 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.914 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.916 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.280 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.965 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.317 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.198 |
| SRR2868004 | Drought Stress (root) | 10.515 |
| SRR2967015 | Control (root) | 9.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.930 |
| SRR9715740 | Leaf | 9.921 |
| SRR9715741 | Leaf | 12.531 |
| SRR9715739 | Root | 18.263 |
| SRR9715742 | Root | 36.817 |
| SRR9715743 | Root | 37.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.999 |
| SRR8749028 | MeJA induced 9h | 1.923 |
| SRR8749029 | MeJA induced 9h | 0.458 |
| SRR8749030 | Uninduced | 1.645 |
| SRR8749031 | Uninduced | 2.414 |
| SRR8749032 | Uninduced | 1.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.535 |
| SRR8400027 | Control - Root | 16.313 |