Gene detail information of Glyur000132s00015924 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52850.1 | 3.00E-30 | vacuolar sorting receptor homolog 1 |
| NR | XP_004510100.1 | 4.65E-42 | PREDICTED: vacuolar-sorting receptor 1-like [Cicer arietinum] |
| Swissprot | tr|P93026|VSR1_ARATH | 9.00E-37 | Vacuolar-sorting receptor 1 (Precursor) |
| trEMBL | tr|G7LAR4|G7LAR4_MEDTR | 5.00E-42 | Vacuolar-sorting receptor-like protein {ECO:0000313|EMBL:AET01156.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00132 | 43283 | 43633 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.535 |
| SRR1783600 | control | 15.891 |
| SRR1783602 | moderate drought stress | 11.804 |
| SRR1811619 | moderate drought stress | 11.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.978 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.831 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.042 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.324 |
| SRR2868004 | Drought Stress (root) | 21.934 |
| SRR2967015 | Control (root) | 23.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.730 |
| SRR9715740 | Leaf | 18.946 |
| SRR9715741 | Leaf | 24.524 |
| SRR9715739 | Root | 42.047 |
| SRR9715742 | Root | 63.525 |
| SRR9715743 | Root | 84.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.148 |
| SRR8749028 | MeJA induced 9h | 1.633 |
| SRR8749029 | MeJA induced 9h | 0.347 |
| SRR8749030 | Uninduced | 2.312 |
| SRR8749031 | Uninduced | 1.045 |
| SRR8749032 | Uninduced | 0.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.602 |
| SRR8400027 | Control - Root | 40.747 |