Gene detail

Gene detail information of Glyur000131s00013013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19600.1	0	sulfate transporter 3;5
NR	AGC92012.1	0	SST1-like protein [Pisum sativum]
COG	YP_007672042.1	1.00E-86	sulfate permease [Polaribacter sp. MED152]
Swissprot	tr\|Q94LW6\|SUT35_ARATH	0	Probable sulfate transporter 3.5
trEMBL	tr\|L7X2W8\|L7X2W8_PEA	0	SST1-like protein {ECO:0000313\|EMBL:AGC92012.1}

Sequence

Transcript Sequence

>Glyur000131s00013013.1
ACGCGGCTCACACAAACAACTTCCCCCACCCCTGTTTTTTTTCTTCTTCTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTTACATTATATGGTTTCGTCAATGGGAAACCACGTGGAGGAAGATGAGGTGAACAATAATGGTGGTGATGATTGTAATAATAATAATAATAATAATAATGTTCATGGTGTGAACTTCTCAACCCAGAGAGAGTTTGTGACGAAACTGAAATCGGGGTTGAAAGAAACGTTTTTCCCTGATGATCCTTTTAGGCAGTTCAAGGAAGAGGAGAAGCAATCNCGAAGGTTCATCAAAGGGGTTCAATACTTTGTACCAATCTTCGAGTGGTTACCGAATTACAATATCCGAACTTTTTTCTCTGACTTGGTCGCTGGCCTCACCATCACCAGTCTTGCCATCCCTCAAGGCATTAGCTATGCCAAACTCGCCAACCTCCCTCCCCTCATTGGCCTCTATTCCAGCTTTGTCCCACCTCTAGTGTATGCTGTTTTTGGGAGTTCTAGGCACATGGCCGTGGGGACGATAGCAGCAGCATCACTGCTTATAGGTCAAACTATATCAAGTGTGGCAAACCCTGAAACAGACCCACAGCTATACCTTCACTTGATTTTCACAACCACCTTTATCACCGGTGCTTTCCAGGCTTGCTTGGGTATTTTCAGGCTGGGGATATTGGTGGATTTCTTTTCACATTCTACCATCACTGGCTTTATGGGAGGGACTGCAGTAATTCTCATCCTCCAACAACTGAAGGGCATATTTGGCATGAAACATTTTTCAACCAAAACCAACGTGATGGCGGTAGTGAAGAGCATCATCGCCAATAGACATGAGATTAGGTGGGAAACCACAGTTCTTGGAGTGATCTTCATTGCTTTCTTGCTATTTACCAGGCACCTGAAAACTAGGAATCCAAAACTCTTTTGGGTATCAGCAATAGCTCCAATGACAACTGTAGTAGTTGCTGGCGTTTTCACTTACCTCGTCAAAGGCCAACATCATGGAATTCAAATTGTGGGTCATTTAGATAAAGGATTAAATCCTTTGTCCATCCAGTATTTGAACTTCGACAGTAGATATTTAGGAGCAGTGATGCAAGCTGGCCTCATCACAGGAGTCTTGTCATTAGCGGAAGGAATAGCAATAGGAAGAAGCTTTTCTGTTACTGATAATACACCTCACGATGGAAATAAAGAGATGATAGCTTTTGGCCTTATGAACTTATGTGGTTCTTTTACTTCATGTTACTTGACTAGTGGACCATTTTCCAAGACGGCTGTGAATTACAATGCAGGGTGTAAGACTGCCATGGCAAATGTGATACAGGCAATCCTAATGGCTCTCACACTACAATTTTTGGCCCCACTGTTTGGATTTACCCCTCTTGTTGCTCTATCAGCCATTATTACAGCTGCCATGGTGGGGCTTATTAATTATGAAGAGGCTATCTACCTCTTCAAAGTTGACAAGTTCGATTTTGTTATTTGCATGAGTGCCTTCCTTGGTGTCGCCCTTATAAGCATGGATATTGGCCTCATGATCTCTGTTGGACTCGGTTTGCTTAGAGGACTGTTATATGTGGCTAGACCTGCGGCATGCAAGCTTGGAAAGTTNCCTAACTCAGGTTTATATAGAGATGTTGAGCAATATTCTTCTTCAACAACAGTCCCAGGAGTTCTAATTGTACAACTTGGTTCTCCCGTTTACTTTTCAAATTCTACCTATGTCAAAGAAAGGATTATGAGGTATGTTAAAAGTGAGCAAAGCTCTAGTGGAGATATTGTTGAGCACATCATACTCGATTTGTCAGGTAAATTAAAGAAAATTCTTTACCCTTTGTCATTAGTAAACCCAAGGCTGGAGGTTATGGAGAAGCTAATAGTATCCAAGTTTGTTGACAAGGTTGGAAAGGAGTCGTTCTANCTAAATTTGGAGGATGCAGTGATGGCAAGTCAATATTCACTTCGTAGTACTTCAAAGACAAACAATAATAATAATGAAGAGACACTTTAAGATACTAAATATAGTCATGCCTAAGTACAACAAAACAAAGCAAGGTTGTAAACATTGTTATTATTATTGTTGTTGTTTTTTTATAAGCCAAAATTTATTAAAAAGTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00131	312286	319302	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

GO:1902358 sulfate transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000131s00013013.1	PF13792.1	Sulfate_tra_GLY	81	163	3.50E-32
Glyur000131s00013013.1	PF00916.15	Sulfate_transp	194	472	5.00E-86
Glyur000131s00013013.1	PF01740.16	STAS	531	581	2.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.257
SRR1783600	control	2.283
SRR1783602	moderate drought stress	2.666
SRR1811619	moderate drought stress	2.681

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.254
DRR006520	Root Summer glycyrrhizin high producing strain	8.571
DRR006521	Root Winter glycyrrhizin high producing strain	13.432
DRR006522	Root Winter glycyrrhizin high producing strain	13.199
DRR006523	Root Summer glycyrrhizin low producing strain	43.282
DRR006524	Root Summer glycyrrhizin low producing strain	43.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.247
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.225

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.583
SRR2868004	Drought Stress (root)	13.764
SRR2967015	Control (root)	10.060

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.030
SRR9715739	Root	0.792
SRR9715742	Root	22.230
SRR9715743	Root	16.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	226.580
SRR8749028	MeJA induced 9h	306.965
SRR8749029	MeJA induced 9h	172.934
SRR8749030	Uninduced	42.102
SRR8749031	Uninduced	15.762
SRR8749032	Uninduced	26.710

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.632
SRR8400027	Control - Root	5.230