Gene detail information of Glyur000131s00013012 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79990.5 | 1.00E-08 | structural molecules |
| NR | XP_004287086.1 | 5.18E-09 | PREDICTED: coatomer subunit beta'-1-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q5VQ78|COB21_ORYSJ | 6.00E-10 | Coatomer subunit beta'-1 |
| trEMBL | tr|B9GWZ6|B9GWZ6_POPTR | 5.00E-09 | Uncharacterized protein {ECO:0000313|EMBL:EEE79162.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00131 | 304272 | 305767 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.876 |
| SRR1783600 | control | 0.846 |
| SRR1783602 | moderate drought stress | 3.921 |
| SRR1811619 | moderate drought stress | 4.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.934 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.874 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.987 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.467 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.517 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.094 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.266 |
| SRR2868004 | Drought Stress (root) | 0.124 |
| SRR2967015 | Control (root) | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.750 |
| SRR9715740 | Leaf | 1.473 |
| SRR9715741 | Leaf | 1.169 |
| SRR9715739 | Root | 0.204 |
| SRR9715742 | Root | 0.281 |
| SRR9715743 | Root | 0.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.221 |
| SRR8749028 | MeJA induced 9h | 0.312 |
| SRR8749029 | MeJA induced 9h | 0.125 |
| SRR8749030 | Uninduced | 0.082 |
| SRR8749031 | Uninduced | 0.078 |
| SRR8749032 | Uninduced | 0.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.811 |
| SRR8400027 | Control - Root | 1.980 |