Gene detail

Gene detail information of Glyur000131s00013007

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24460.1	1.00E-58	Serinc-domain containing serine and sphingolipid biosynthesis protein
NR	XP_007160349.1	1.48E-122	hypothetical protein PHAVU_002G314300g [Phaseolus vulgaris]
trEMBL	tr\|V7CQF6\|V7CQF6_PHAVU	6.00E-123	Uncharacterized protein {ECO:0000313\|EMBL:ESW32344.1}

Sequence

Transcript Sequence

>Glyur000131s00013007.1
ATGGAGACTGGGGAAAGCAACAATAGTAGTAGTAGTAACCAGCAGCAAGGGTGTGGACTGTTCAAGGATTCTTCTTCATGGTACACTCAATTCAGAAATGCATCAAATCCTTTGATGGCAAGATATGTCTATGCTTTGATTTTCCTAGTTGCCAATATGTTGGCATGGGCTGCACGTGATGAACTTTCTAGCCTTAGTGCTTTAACACAACTGAAAGGGTTAAAAGCATGCAAGGTTGGAAAAGATTGTTTGGGAGCACATGGTGTTTTGCGTGTGAGCATGGGTTGCTTTGTATCCTTTTTCAAGTTTCAATTATTTTTTATGACAATGTTTTGGTCAACTGCTGGAACTTCTAAATTGAACGAAGTGAGAGATACATGGCACTCTGGATGGTGGTCAGTGAAGATTGTTCTCTGGGTTGCCTTGACTATCTTCCCTTTTTTACTCCCTTCTGAGTTGATTGATCTCTATGGTTGGGGAGGTTGCACATTTTGGTGCCGGCCAAATCCATGTGATGTTATTTGCAACTACTTCATATTTTATCTGTTTGGTGGGGATCATTTTGATGTACATTTGGTAAATGCTGGCATNCTGAGCCCAGGGTTGATGGGGCTTTATGTTGTCTTCCTTTGCTGGTGTGCAATTAGAAGGCAAGGCTACCAATCTTCTCTTTGCCTATACTTATTATTGGATTTTGAACCAGAAGGAGACCACTGTATCAGGAAGTCAGGCTCTGCAGCCAACACAGACTGGCAAAACATCATTAGCTTTGTTGTTGGAATATTAGCAATAGTTATTGCAACATTTTCTACAGGCATAGATTCCAAATGCTTCCAGTTCAGGAAGGGTGATACACCTGCAGAAGAAGATGATGTTCCATANGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCAATGCTATTGGTAGGATGGAATAGTCACCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGTGCTTGGGTCAGAATAGTAAATGAATGGTTGGCAGTATGTGTTTACTGTAATATGGATGCTGGTAGCTCCAATTATATGGAAGCACAGACAAACTGAATCTACATGAGAACTTCCTTGTGATACTGTTCTGGCTTGATATTGTGAGGAATTAACATTAACATCTTCAAAGTGCCCCCATATATGTGCTGCATATGTAGTGGACTCCTTCAGCTGTGCACTCTCTCAGATAGGGAAAAAGGAACTGCAAATGCAACACACAGGAAATTTTCAAGTCAGAAGAAGCAATGGCTCTTGGCACAAATGCCACACCATATTGTTGGATTTGTTATGTGAAGCTATACAGTCCTCTTCCTCTCATTCCATCCAACGGATACAACAAAGAAAATATACACCATTTACCTGTTCATGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00131	258045	261916	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000131s00013007.1	PF03348.10	Serinc	28	158	1.30E-13
Glyur000131s00013007.1	PF03348.10	Serinc	288	350	5.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.242
SRR1783600	control	4.538
SRR1783602	moderate drought stress	3.414
SRR1811619	moderate drought stress	3.658

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.202
DRR006520	Root Summer glycyrrhizin high producing strain	15.539
DRR006521	Root Winter glycyrrhizin high producing strain	0.576
DRR006522	Root Winter glycyrrhizin high producing strain	0.836
DRR006523	Root Summer glycyrrhizin low producing strain	7.986
DRR006524	Root Summer glycyrrhizin low producing strain	7.721
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.940

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.147
SRR2868004	Drought Stress (root)	16.844
SRR2967015	Control (root)	11.547

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.261
SRR9715740	Leaf	20.620
SRR9715741	Leaf	20.742
SRR9715739	Root	1.448
SRR9715742	Root	6.210
SRR9715743	Root	5.258

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.492
SRR8749028	MeJA induced 9h	0.969
SRR8749029	MeJA induced 9h	0.671
SRR8749030	Uninduced	0.404
SRR8749031	Uninduced	0.620
SRR8749032	Uninduced	1.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.492
SRR8400027	Control - Root	10.145