Gene detail information of Glyur000131s00012998 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24440.1 | 1.00E-138 | Fibronectin type III domain-containing protein |
| NR | XP_006583398.1 | 0 | PREDICTED: VIN3-like protein 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LHF5|VIL1_ARATH | 3.00E-165 | VIN3-like protein 1 |
| trEMBL | tr|I1KIT9|I1KIT9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G09800.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00131 | 218636 | 225736 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000131s00012998.1 | PF00041.16 | fn3 | 292 | 372 | 3.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.764 |
| SRR1783600 | control | 4.860 |
| SRR1783602 | moderate drought stress | 3.669 |
| SRR1811619 | moderate drought stress | 3.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.941 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.884 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.764 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.689 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.694 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.092 |
| SRR2868004 | Drought Stress (root) | 22.110 |
| SRR2967015 | Control (root) | 22.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.410 |
| SRR9715740 | Leaf | 8.710 |
| SRR9715741 | Leaf | 12.684 |
| SRR9715739 | Root | 7.992 |
| SRR9715742 | Root | 13.852 |
| SRR9715743 | Root | 14.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.424 |
| SRR8749028 | MeJA induced 9h | 11.270 |
| SRR8749029 | MeJA induced 9h | 8.424 |
| SRR8749030 | Uninduced | 16.217 |
| SRR8749031 | Uninduced | 34.671 |
| SRR8749032 | Uninduced | 10.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.353 |
| SRR8400027 | Control - Root | 22.661 |