Gene detail information of Glyur000131s00012996 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24430.1 | 0 | ATP binding |
| NR | XP_003534183.1 | 0 | PREDICTED: cytosolic Fe-S cluster assembly factor nubp1-A-like [Glycine max] |
| COG | YP_001996237.1 | 1.00E-82 | hypothetical protein Ctha_1327 [Chloroherpeton thalassium ATCC 35110] |
| Swissprot | tr|Q6STH5|HF101_ARATH | 0 | Fe-S cluster assembly factor HCF101, chloroplastic (Precursor) |
| trEMBL | tr|I1L4F4|I1L4F4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G31980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00131 | 210364 | 217057 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000131s00012996.1 | PF01883.14 | DUF59 | 83 | 156 | 2.20E-15 |
| Glyur000131s00012996.1 | PF13614.1 | AAA_31 | 181 | 230 | 1.30E-06 |
| Glyur000131s00012996.1 | PF10609.4 | ParA | 277 | 353 | 3.50E-28 |
| Glyur000131s00012996.1 | PF06155.7 | DUF971 | 429 | 513 | 1.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.534 |
| SRR1783600 | control | 0.516 |
| SRR1783602 | moderate drought stress | 0.995 |
| SRR1811619 | moderate drought stress | 0.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.737 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.784 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.058 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.191 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 63.716 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.985 |
| SRR2868004 | Drought Stress (root) | 10.757 |
| SRR2967015 | Control (root) | 8.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 70.195 |
| SRR9715740 | Leaf | 102.775 |
| SRR9715741 | Leaf | 77.208 |
| SRR9715739 | Root | 0.979 |
| SRR9715742 | Root | 1.193 |
| SRR9715743 | Root | 1.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.293 |
| SRR8749028 | MeJA induced 9h | 1.005 |
| SRR8749029 | MeJA induced 9h | 0.587 |
| SRR8749030 | Uninduced | 0.167 |
| SRR8749031 | Uninduced | 0.254 |
| SRR8749032 | Uninduced | 0.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.748 |
| SRR8400027 | Control - Root | 3.998 |