Gene detail

Gene detail information of Glyur000131s00012993

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19460.1	2.00E-97	nudix hydrolase homolog 20
NR	AES76753.2	0	nudix hydrolase-like protein [Medicago truncatula]
COG	YP_003526742.1	1.00E-64	NUDIX hydrolase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q8VXZ0\|NUD20_ARATH	7.00E-131	Nudix hydrolase 20, chloroplastic (Precursor)
trEMBL	tr\|G7KNJ9\|G7KNJ9_MEDTR	0	Nudix hydrolase-like protein {ECO:0000313\|EMBL:AES76753.2}

Sequence

Transcript Sequence

>Glyur000131s00012993.1
AAATAATGGAACTGTGGCTTCACTTTCCATGAATGAATCATGAGATAGACGCTGTGCGGCTGAATTACCCAAAAAGAGAAGAAAAACTGTGAGACATAGCCACAATGATGGTAGTTTCGAATTCATGCTGCCTATGCAAGTTTCCAAATGCTACCTTGTCAAGACCCTTCTCTTCTTCACTCTTGTCCTCNCACCCTTTTCCCTCCACTCTCTCACCAACACCTTCCTTCAAGCCCTCCTTTTCTGCTTCTGTGTCAGCCACTAGTAGTGACACGTTCAATCTCACGTGGGACGATGTCTTTCGCATATTTGAACCTGAAGCTGTTGCTGCCACAGAGGACCCTTCTTCTTGTTATCTCCAAGGCTACTTCCACAAAGTCCAACTTTGCAATCGTGGTTCTGACAAACAATCTGCATTCCTTCCATTTGTCATTGAGGGCCACGTTGTTGGATTCATTCACAATGGGTTTGTTNAGCTCTTGAGAGGCTTTAGTGATGTGTTCATTTTCCCCAAAGATGGAAGCCCCTTTGGTGACTGTGTTTCATTGCATCCATTGCTGAAGACAGCTGAGGAAAGAACCAGCGCGGTTGGATATGTAGTAGAGCATTTGGGAGAGGATCATATTCCAGGCATACGGAATGAGCTATACCCCGTGNCGTCATCCTTTGGCGCACCCATTTTCTTTTCATTAGAACGTGCTGCAGCTCCTTATTTTGGCATAAAGGTTTATGGAGTCCAAATGAATGGCTATGTTGAGCTGGATGGGCAGAAGCACCTCTGGATAGGGAAGAGAAGTCACATGAAATCCACATATCCTGGAATGCTTGATCAACTAGTTGCAGGAGGACTGCCACACGGAATCGATTGCAAGGAAAATGTTGTGAAGGAATGTAAAGAGGAAGCAGGAATACCCCGGTCCATCTCTATTAATGCCATACCAGTCAGTGCTGTTTCTTATATGGACATTGAAGGGTATAGATACAAGAGAGATGTTCTATTCTGCTATGACTTGAAACTTCCAGAAAGTTTTGTACCGAAAAATGAAGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACGCAAGTTGCGGAAATCATTCGCAGGATGCAATTTTTCAAAGCAAATTGCAACCTTGTGATCATTGACTTCCTGTTTCGACATGGATTTCACATTGAAGTCAAAATTTCAGCTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00131	191800	196471	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000131s00012993.1	PF00293.23	NUDIX	220	331	2.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.308
SRR1783600	control	4.303
SRR1783602	moderate drought stress	3.655
SRR1811619	moderate drought stress	3.710

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.718
DRR006520	Root Summer glycyrrhizin high producing strain	2.908
DRR006521	Root Winter glycyrrhizin high producing strain	0.336
DRR006522	Root Winter glycyrrhizin high producing strain	0.312
DRR006523	Root Summer glycyrrhizin low producing strain	4.096
DRR006524	Root Summer glycyrrhizin low producing strain	3.851
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.131
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.854
SRR2868004	Drought Stress (root)	5.369
SRR2967015	Control (root)	5.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.318
SRR9715740	Leaf	6.425
SRR9715741	Leaf	3.588
SRR9715739	Root	1.138
SRR9715742	Root	2.186
SRR9715743	Root	1.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.669
SRR8749028	MeJA induced 9h	3.200
SRR8749029	MeJA induced 9h	1.727
SRR8749030	Uninduced	0.896
SRR8749031	Uninduced	1.612
SRR8749032	Uninduced	1.127

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.598
SRR8400027	Control - Root	6.538