Gene detail

Gene detail information of Glyur000131s00012989

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G42050.1	vacuolar ATP synthase subunit H family protein
NR	XP_006574707.1	PREDICTED: V-type proton ATPase subunit H-like [Glycine max]
Swissprot	tr\|Q9LX65\|VATH_ARATH	V-type proton ATPase subunit H
trEMBL	tr\|K7MHB7\|K7MHB7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G25740.2}

Sequence

Transcript Sequence

>Glyur000131s00012989.1
CGGAGTAGTGACACCAGATTCAGTTGTGATCCTCCTTGCGTTGATGCACAAAAAAGAACCGATCTCTATTTGTTCCAAATTCGCAGGGAGTAGCAATAGCACTAGCAGGGTTTCAGTAGTAACAACATGGCACTGGCCGAATTATCCACAGAACAGGTTCTNAGGAGGGACATTCCATGGGAGACCTACATGTCCACTAAGCTGATATCAGGCACGACTCTTCAGCTCTTAAGGCGTTACGATCATCAATCAGAAAGTCACAGAGCACAGTTGCTNAACGATGATGGTCCAGCTTATGTTCATGTGTTTGTTCGTGTTTTGTGTGATATCCACAAAGAAGAGACTGTGGAATATGTTTTAGCTTTGATAGATGAAATGCTTGCAGAAAATCCGAAAAGAGCNAGACTGTTTCATGATAAAGCCCTTGCAGATGAAGACACTTATGAGCCTTTCTTAAGTTACACTGCTTTATTGCTTCAGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTTGTTTAATAGCTAGTGCCAGGCCAAAATATCAGAATGNCAGTGTTGCAAACGGAGAAGTATCAAACTCAAAGAAACCATTTACCACTATTGATGACGTTTTTATAGGCTTGGTAAAATGGCTCTGTGAACAGCTGAAGAAACCTTCACATCCTACTCGGGGTGTCCCTACTGCTATCAGTTGCCTAGCAACTCTACTTAAGGAACCTGTGGTTAGGTCTACCTTTGTTCAACTGGATGGAATCAAGTTGCTTGTACCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTTCTGTATGAAACATGTCTCTGCATATGGCTCTTATCCTACTATGAGCCAGCAATTGAATACCTGGCTACTTCAAGAGCCCTTCCGAGACTTATTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTTATTGTCTCAACCCTTAAGAACTTGTTGTCAAAAGGGNCATTGGGTGCTCAAATGGTTGACCTTCAGCTACCACAGGTTGTTCAGAGTTTGAAAGCTCAAGCATGGAGTGATGAGGACTTGTTGGAGGCATTGAATTACCTGGAAGATGGGCTTAAGGATAACATAAAAAAACTAAGTTCTTATGATAAGTATAAACAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCTATGCACAAAGATAATATATTTTGGCGAGAAAATATTACCAACTTTGAAGAGAATGACTTCCAGATTTTAAGGGTCCTAATAACAATTTTGGACACATCCAGTGATCCAAGGACTCTGGCCGTTGCTTGCTTTGATCTTTCACAGTTCATCCAGCACCATCCTGCTGGGCGTATCATCGTGACTGACCTTAAAGCCAAGGAACGAGCCATGAAATTAATGAATCACGAAAATGCAGAGGTTACTAAAAACGCGCTCCTCTGCATCCAACGGCTTTTCTTAGGTGCAAAGTATGCCAGCTTCCTGCAGGCCTAGATCTGTTTCTGTGGGGTGGAACAAGTGTATGCATTTTNTTCATTCATTGCATTTTCAATTAATTTATTGTCTATGGCCGTTAAGATTTCAGTGTTTAAGAGCAGTTGAAGAAATTTGGCATGAGAAATAAGCATTCCTGATATTCAGCTCTTNATGAGTCTTGGATAAATAGAGTTTTGTAACTTTATACTCGAAGTCGAAATTGTGCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00131	151758	159797	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015991 ATP hydrolysis coupled proton transport

cellular_component
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain

molecular_function

GO:0005488 binding

GO:0005515 protein binding

GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GO:0020037 heme binding

GO:0046961 proton-transporting ATPase activity, rotational mechanism

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000131s00012989.1	PF03224.9	V-ATPase_H_N	6	327	3.90E-85
Glyur000131s00012989.1	PF11698.3	V-ATPase_H_C	332	446	1.20E-42
Glyur000131s00012989.2	PF03224.9	V-ATPase_H_N	6	316	3.00E-79
Glyur000131s00012989.2	PF11698.3	V-ATPase_H_C	321	435	1.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.996
SRR1783600	control	10.218
SRR1783602	moderate drought stress	8.593
SRR1811619	moderate drought stress	8.749

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.076
DRR006520	Root Summer glycyrrhizin high producing strain	12.950
DRR006521	Root Winter glycyrrhizin high producing strain	6.840
DRR006522	Root Winter glycyrrhizin high producing strain	6.437
DRR006523	Root Summer glycyrrhizin low producing strain	10.903
DRR006524	Root Summer glycyrrhizin low producing strain	10.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.233
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.885
SRR2868004	Drought Stress (root)	15.536
SRR2967015	Control (root)	15.671

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.250
SRR9715740	Leaf	8.947
SRR9715741	Leaf	8.334
SRR9715739	Root	3.774
SRR9715742	Root	8.051
SRR9715743	Root	7.577

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.110
SRR8749028	MeJA induced 9h	6.982
SRR8749029	MeJA induced 9h	6.342
SRR8749030	Uninduced	3.270
SRR8749031	Uninduced	1.898
SRR8749032	Uninduced	2.480

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.740
SRR8400027	Control - Root	28.277