Gene detail information of Glyur000131s00012988 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68660.1 | 8.00E-20 | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein |
| NR | XP_004157424.1 | 4.06E-30 | PREDICTED: ATP-dependent Clp protease adapter protein ClpS-like [Cucumis sativus] |
| COG | YP_007127210.1 | 9.00E-10 | ATP-dependent Clp protease adapter protein clpS [Gloeocapsa sp. PCC 7428] |
| trEMBL | tr|I3SN73|I3SN73_LOTJA | 6.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:AFK41715.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00131 | 148542 | 150438 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000131s00012988.1 | PF02617.12 | ClpS | 50 | 83 | 0.00031 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.250 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 128.201 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 133.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.109 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.102 |
| SRR9715740 | Leaf | 140.372 |
| SRR9715741 | Leaf | 49.014 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.001 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.038 |
| SRR8400027 | Control - Root | 0.012 |