Gene detail

Gene detail information of Glyur000131s00012982.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20050.1	3.00E-74	C-8,7 sterol isomerase
NR	AFK46718.1	8.33E-146	unknown [Lotus japonicus]
Swissprot	tr\|O48962\|EBP_ARATH	1.00E-93	Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
trEMBL	tr\|I3T2H6\|I3T2H6_LOTJA	3.00E-146	Uncharacterized protein {ECO:0000313\|EMBL:AFK46718.1}

Sequence

Transcript Sequence

>Glyur000131s00012982.1
TTGAGTCCAACTCAACAACACAGTCAACACTCAAAACATTCAACAACAACAACACTATCTCATATTCCCATTCTCATTCCCATCGCAGAAGGAACAAACAGAAGAGAAGAGATGGAGGGATCTCAAGTCTCACAGGGTCACCCTTACGTTCCACGTGACCTTCATCTACCCGATTACGTTCCTTGCTTCCTCTCTCAGTCCAACATTCTCTCCGTCTTCGCCTTCTTCACTCTTCTCCTCGTTTNTCTCATCTGGATCTTCTCAGGGCGCCTACCTAAGAAAACAAAAGTTGATAGACTGCTAATGTGCTGGTGGGCCTTCACAGGCCTCACACACATGATTGTTGAGGGTTACTTTGTTTTCTCACCAGAGTTTTTCAAGGATAAGAGTGGCTTCTACCTGGCTGAAATTTGGAAGGAATATAGCAAAGGGGATTCAAGGTATGCAGGAAGGGATGCAGGGGTAGTTACTGTTGAAGGACTAACAGCAGTTTTGGAGGGTCCAGCTAGTATTCTAGCAGTATATGCAATAGCTATTGGAAAGTCATATAGCTACATACTTCAGTTTGCCATTTCTTTGTGTCAGCTATATGGAACTGCTGTGTATTATATAACAGCAATTCTGGAAGGTGATAATTTTTCTACAAATTCATTTTACTATTATGCATACTANATTGGAGCAAATTTCTCTTGGATCGTAATACCGTCGCTCATCTCCATCCGCTGCTGGAGGAAGATTTGTGCTGCGTTTCGAGTTCAAGGCCAGACAAGAAAGCCTAAAGTTCGTTGATGCAGACCGGCCTTTTCAGGTTAATCAGTTTTGATGATCCTGGAACTAATAATGTTNTGCTGGGATATTGGTTGAGATAGAAGAGAATGTTTTATTAAGAATTGTGTCAATTGATTCTCTTAAACTGCATAGTTCAAAAAAAAAATTCCATTGTCAGTTGAGAAAATGATGTTTGAAGTTTTGAACAAAGTTCTTCTATCCTATTACTGATATGGAATTGAATGTTGACAAGCTCATGCTTTGACTAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00131	121769	124544	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01824	EBP	EC:5.3.3.5	Steroid biosynthesis	map00100

Gene Ontology

biological_process
GO:0016125 sterol metabolic process

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0047750 cholestenol delta-isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000131s00012982.1	PF05241.7	EBP	70	253	1.10E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	66.993
SRR1783600	control	67.132
SRR1783602	moderate drought stress	27.759
SRR1811619	moderate drought stress	27.919

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.309
DRR006520	Root Summer glycyrrhizin high producing strain	39.305
DRR006521	Root Winter glycyrrhizin high producing strain	15.762
DRR006522	Root Winter glycyrrhizin high producing strain	15.157
DRR006523	Root Summer glycyrrhizin low producing strain	24.291
DRR006524	Root Summer glycyrrhizin low producing strain	24.338
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	93.338
SRR2868004	Drought Stress (root)	68.977
SRR2967015	Control (root)	59.635

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.739
SRR9715740	Leaf	41.243
SRR9715741	Leaf	43.628
SRR9715739	Root	23.321
SRR9715742	Root	28.120
SRR9715743	Root	27.061

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.718
SRR8749028	MeJA induced 9h	38.360
SRR8749029	MeJA induced 9h	36.323
SRR8749030	Uninduced	11.215
SRR8749031	Uninduced	5.630
SRR8749032	Uninduced	6.420

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.935
SRR8400027	Control - Root	71.845