Gene detail information of Glyur000131s00012977 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62830.1 | 0 | LSD1-like 1 |
| NR | XP_006588295.1 | 0 | PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max] |
| COG | YP_007109585.1 | 2.00E-66 | amine oxidase [Geitlerinema sp. PCC 7407] |
| Swissprot | tr|Q8VXV7|LDL1_ARATH | 0 | Lysine-specific histone demethylase 1 homolog 1 |
| trEMBL | tr|I1L4D4|I1L4D4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G31770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00131 | 84815 | 87223 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-SWI3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000131s00012977.1 | PF04433.12 | SWIRM | 115 | 198 | 1.30E-14 |
| Glyur000131s00012977.1 | PF01593.19 | Amino_oxidase | 227 | 657 | 6.20E-97 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.989 |
| SRR1783600 | control | 1.929 |
| SRR1783602 | moderate drought stress | 1.239 |
| SRR1811619 | moderate drought stress | 1.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.100 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.203 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.498 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.470 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.998 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.900 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.330 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.983 |
| SRR2868004 | Drought Stress (root) | 7.703 |
| SRR2967015 | Control (root) | 6.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.519 |
| SRR9715740 | Leaf | 3.544 |
| SRR9715741 | Leaf | 3.074 |
| SRR9715739 | Root | 5.643 |
| SRR9715742 | Root | 3.323 |
| SRR9715743 | Root | 4.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.842 |
| SRR8749028 | MeJA induced 9h | 4.639 |
| SRR8749029 | MeJA induced 9h | 3.097 |
| SRR8749030 | Uninduced | 2.365 |
| SRR8749031 | Uninduced | 1.475 |
| SRR8749032 | Uninduced | 1.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.491 |
| SRR8400027 | Control - Root | 5.760 |