Gene detail information of Glyur000130s00006930 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63090.4 | 3.00E-51 | Lateral organ boundaries (LOB) domain family protein |
| NR | XP_010108819.1 | 2.99E-73 | hypothetical protein L484_020555 [Morus notabilis] |
| Swissprot | tr|Q9FML4|LOB_ARATH | 1.00E-69 | Protein LATERAL ORGAN BOUNDARIES |
| trEMBL | tr|W9S0S7|W9S0S7_9ROSA | 1.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:EXC20334.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00130 | 307197 | 307676 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000130s00006930.1 | PF03195.9 | DUF260 | 17 | 116 | 3.00E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.020 |
| SRR1783600 | control | 14.875 |
| SRR1783602 | moderate drought stress | 11.034 |
| SRR1811619 | moderate drought stress | 10.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.782 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.277 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.919 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.626 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.438 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.287 |
| SRR2868004 | Drought Stress (root) | 15.813 |
| SRR2967015 | Control (root) | 13.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.200 |
| SRR9715740 | Leaf | 0.053 |
| SRR9715741 | Leaf | 0.136 |
| SRR9715739 | Root | 10.066 |
| SRR9715742 | Root | 5.298 |
| SRR9715743 | Root | 6.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.547 |
| SRR8749028 | MeJA induced 9h | 3.977 |
| SRR8749029 | MeJA induced 9h | 4.861 |
| SRR8749030 | Uninduced | 0.066 |
| SRR8749031 | Uninduced | 0.431 |
| SRR8749032 | Uninduced | 1.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.172 |
| SRR8400027 | Control - Root | 32.752 |