Gene detail

Gene detail information of Glyur000130s00006917

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14550.1	2.00E-133	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	XP_003630312.1	0	BC10 protein [Medicago truncatula]
trEMBL	tr\|V7BY52\|V7BY52_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22927.1}

Sequence

Transcript Sequence

>Glyur000130s00006917.1
CACGCAACCAGAAAAAGTAAGTAGCNACTTTAAGACATCTCAACTGAGATATATATAAGAAGGAGAAGCCACTTCCTCAGTTCTCACTCTTCATACCCAAAACCAAAAAAACAAACTTTTCTTCACTCTTAACTCTTACTCTATCACTACCTCACCCTCTCTCTTGTTCTTCTTCATTTCTAAGCTTCATTTCCAAATAACATTCCTAAGTGGGGTTGGGTGGGGGGTTTGTGAATTGTGATTATTGGGTTACTATGGATCTGGTTGGATCTTCTGCTGAATATGAAGAAGAAGGTGGTTCAGCACAAATGGAAGAAGAAGCTTTTTGCTTTGATCTTGGTGGTGGTGCTTTGTTTTGGGAGCTTGTTATTCGGTACACTCATGTTGTGGGGCTGGTTTCTTTGCAACACCAATTCGTTTCTCAATCTCAGCTTCAGAGGCCTAAGATTGCCTTTCTCTTCATTGCAAGGAACAGGCTTCCCTTGGAATTGGTTTGGGATGCATTTTTTCGGGGAGGCAATAACAAATTCTCAATTTTCGTCCACTCAAGGCCAGGGTTTCTGTTCAACGAGGCAACAACTAGATCAACATATTTTTTGAATCGTCAAGTTAATGATAGCATACAGGTAGATTGGGGAGAAGCAAGCATGATAGAGGCTGAGCGTGTTTTGCTTAGACATGCGCTTGATGATCCTTTAAATGACCGCTTTGTTTTTCTCTCAGATAGCTGTATACCTTTATACAACTTCAGCTACACATATGACTACATCATGTCAACATCGACTAGTTTCGTTGATAGCTTTGCTGACACAAAAGAAGGCCGTTACAATCCAAAAATGGATCCAGTTATTCCTGTCTATAATTGGAGAAAAGGATCTCAGTGGGCTGTTCTGACCAGAAAGCATGCCAAGGTTGTAGTGGAAGATGAAACTGTCTTTCCCATGTTTCAAAAATATTGCAAGAAAAAGCCACTACCAGAATTTTGGAGGGATCAACACATTCCTGCTGACACGTCTAAGGTGCATAACTGTATACCGGATGAACACTATGTTCAAACATTACTGGCTCAAAACAACCTGGAAGGAGAACTCACACGAAGATCGCTGACACATACCGCCTGGGATATTTCCAACTCAAAGGATCGAGAGCGCCGGGGATGGCATCCAGTGACTTACAAGTACTCAGATGCTACACCCATGCTTATAAAATTCATAAAGGAAATAGATAATATTTATTATGAGACGGAATACCGAAGAGAATGGTGCAGCAGCAAGGTCTGTTCTGGGAGATTTCAGTTAAGTGAACAAAATGCTCATTGCCAGCAGCTGATACAAGCAGCAAAATGTACTCCAGTAAAGAAAAATAAGAGGGAGAAAAGAGAATAAAGTAAAAGCAGTTGAAGATTATTGACGACCACACGGATTATGTATAATGAATTTGTATATTTGCTATTTAGAAAGTTAGAAAAGAGTGCATGTGGTGTATATGTACTAATTCTTTTTTATTTTTCAGAATAATTTTGGCAAAGAATTATGCATGACAGTCCCGTATAATAGACATGATCGACCATTCTATTTGAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00130	234229	239352	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000130s00006917.1	PF02485.16	Branch	65	320	1.70E-81
Glyur000130s00006917.2	PF02485.16	Branch	65	307	5.00E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.374
SRR1783600	control	9.681
SRR1783602	moderate drought stress	7.178
SRR1811619	moderate drought stress	7.271

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.454
DRR006520	Root Summer glycyrrhizin high producing strain	21.715
DRR006521	Root Winter glycyrrhizin high producing strain	19.537
DRR006522	Root Winter glycyrrhizin high producing strain	19.612
DRR006523	Root Summer glycyrrhizin low producing strain	19.301
DRR006524	Root Summer glycyrrhizin low producing strain	19.345
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.939
SRR2868004	Drought Stress (root)	15.943
SRR2967015	Control (root)	18.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.993
SRR9715740	Leaf	13.287
SRR9715741	Leaf	13.651
SRR9715739	Root	1.157
SRR9715742	Root	7.907
SRR9715743	Root	5.866

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.515
SRR8749028	MeJA induced 9h	9.122
SRR8749029	MeJA induced 9h	3.690
SRR8749030	Uninduced	4.614
SRR8749031	Uninduced	0.931
SRR8749032	Uninduced	0.651

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.720
SRR8400027	Control - Root	24.331