Gene detail information of Glyur000130s00006915 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40480.1 | 2.00E-25 | embryo defective 3012 |
| NR | XP_006579786.1 | 5.23E-38 | PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max] |
| Swissprot | tr|F4KHD8|GP210_ARATH | 3.00E-28 | Nuclear pore complex protein GP210 {ECO:0000303|PubMed:21189294} (Precursor) |
| trEMBL | tr|K7KNP5|K7KNP5_SOYBN | 3.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G09015.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00130 | 214177 | 226769 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.889 |
| SRR1783600 | control | 4.366 |
| SRR1783602 | moderate drought stress | 2.867 |
| SRR1811619 | moderate drought stress | 2.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.901 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.472 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.234 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.292 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.950 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.360 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.731 |
| SRR2868004 | Drought Stress (root) | 20.089 |
| SRR2967015 | Control (root) | 15.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.348 |
| SRR9715740 | Leaf | 52.727 |
| SRR9715741 | Leaf | 33.069 |
| SRR9715739 | Root | 7.997 |
| SRR9715742 | Root | 10.270 |
| SRR9715743 | Root | 11.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.798 |
| SRR8749028 | MeJA induced 9h | 10.780 |
| SRR8749029 | MeJA induced 9h | 5.231 |
| SRR8749030 | Uninduced | 8.210 |
| SRR8749031 | Uninduced | 8.377 |
| SRR8749032 | Uninduced | 5.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.534 |
| SRR8400027 | Control - Root | 18.772 |