Gene detail information of Glyur000130s00006912 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40480.1 | 0 | embryo defective 3012 |
| NR | XP_004489232.1 | 0 | PREDICTED: nuclear pore membrane glycoprotein 210-like [Cicer arietinum] |
| Swissprot | tr|F4KHD8|GP210_ARATH | 0 | Nuclear pore complex protein GP210 {ECO:0000303|PubMed:21189294} (Precursor) |
| trEMBL | tr|K7KNP4|K7KNP4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G09015.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00130 | 177793 | 196864 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000130s00006912.1 | PF02368.13 | Big_2 | 503 | 549 | 9.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.880 |
| SRR1783600 | control | 13.019 |
| SRR1783602 | moderate drought stress | 14.392 |
| SRR1811619 | moderate drought stress | 14.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.549 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.661 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.448 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.394 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.800 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.019 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.522 |
| SRR2868004 | Drought Stress (root) | 13.185 |
| SRR2967015 | Control (root) | 13.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.176 |
| SRR9715740 | Leaf | 5.037 |
| SRR9715741 | Leaf | 3.113 |
| SRR9715739 | Root | 2.161 |
| SRR9715742 | Root | 15.966 |
| SRR9715743 | Root | 13.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.251 |
| SRR8749028 | MeJA induced 9h | 11.297 |
| SRR8749029 | MeJA induced 9h | 6.688 |
| SRR8749030 | Uninduced | 1.283 |
| SRR8749031 | Uninduced | 1.029 |
| SRR8749032 | Uninduced | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.482 |
| SRR8400027 | Control - Root | 23.420 |