Gene detail

Gene detail information of Glyur000130s00006899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27550.1	1.00E-112	RNA-binding CRS1 / YhbY (CRM) domain protein
NR	KHN27472.1	0	Putative CRM domain-containing protein, chloroplastic [Glycine soja]
Swissprot	tr\|Q67XL4\|Y3544_ARATH	2.00E-45	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBL	tr\|K7KNP7\|K7KNP7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G09100.2}

Sequence

Transcript Sequence

>Glyur000130s00006899.1
GTCAAAGGTATANTGAGAAGAACTGCGAACTGTGTGTGATACTGATTGGTGAGCAAAGGAGGAAGGAGAGNGATACTGATTGAATCAAGCATGTTTGGTGGTGCGAGGAATCTTCAGAGGCATTGCCTCAAACCCCTCTCCTCTCTCTTCCCTCTTCAATCCAATCTTCTCTTCAACTACTACAGAAATGTTGTACCTTTAGGACAAGGATCNGAGCAAAGCAACATTGTTAAAGTTGAAGCATACCATAAAGTTAGTTTGTGTTGTCGTGTTAAACCNTTTGGTCTTTTGAATGGATCATCATTTTCGCGGGCAATGTCAACATCGAAGGGAAGGAGTATGCGGAGCAAGGTGGAAAGGAGAATGCAGAAAGAATCTGGTAAGACATTGAGGGAGATTCGTAGAGCTAAAAAGCTGAAGAAGAAACTCATGACTGAGGAGGAGAGGCTCATTTACAATCTCAAAAGAGCCAAGAAGAAAGTGGCATTGCTACTTCAAAAACTCAAGAAATATGAGCTACCAGATCTGCCTCCTCCACGGCATGACCCAGAGCTCTTAACACCTGAACAGCTTCAGGCATTTAAAAAAATTGGATTCAAGAATAAGAATTATGTTCCAGTTGGTGTTCGTGGAGTCTTTGGAGGAGTTGTGCAAAATATGCATCTCCATTGGAAGTTTCATGAGACTGTGCAAGTTTGTTGTGACAACTTCCCCAAGGAAAAAATAAAAGAAATGGCTGCAATGCTTGCAAGATTGAGTGGTGGGATTGTGATAAACGTTCATAATGTGAAGACAATCATTATGTTCCGTGGTAGAAACTATCGCCAACCCAAAAACTTGATACCTATTAACACCCTTACNAAGAGGAAGGCTCTATTCAAGGCCAGATTCGAGCAAGCTCTTGAATCTCAGAANTTAAACATAAAGAAAATAGAACAGCAGCTCCGGCGGACGGGAGTAAATCCTGAGGATCCAACTGCCATGGCCAGCATCCAAAGAGTGGCTTCCACATTCTTCAATGCCATTGACAAGAAAGAGGGAAGCCCTTATGTCTTCCGTGAAGGCAAGCAGTCAATAATAGAACCTACTGAAGGCTTGGAAGAGTCAGAGCCTTCTGTTGATAGTGATCAGGAAGAGCTGGATCAGTTCATCGCCGAGATAGAGGATGCAGCGGATAAGGAATATGAAGCTGAAGAGGCCAAAGAAAAAGAAGAGCTTGGCAGAATTAGATATTGGAACAGAGAAGAGTTTGGTGGAAGATTCAAAAGATCAGATGATTCAAGAAATGATGACTATGATGGTGAGGTTGGAAGATTCAGAAGATCAGATGCTTCTAGAAATAGTGGCTATGATGGTGAGGTTAGAGGCTCAAGGGCTTGGCAGACAACACATCCCAAGCGTTATGAAGAGATTGCTCATTCTGACAATGATGATGACGANGACGATGATGAATGGCATCCCAGTAATGTTGCAGATGATAGTGATATTGACAGCAATTCTGATGAAGCCAGAGGCAGGTTCGAGGAAAGTAGGGGGAGAAGAGAGAGGAAGAATAATATCAGTATTGGTAAGCCCCAAGTTAATGGTAGTCCAAATAGACATGCTGAAGCTAAATTTAGGAGGAATGTGGCCATAGAAGAATCTGAATCAGAAGGTATGCTTAGTAATGTTGAAAATGCAATGTGGGAGTCTGATGANGAAGAGAGTAACGACTCGGGGCATTTGAGAATGTTCGGCGATAACTACAAGAGCAGCAGCAGCAGCGACGATGAGTGTGCATATCAACTAAAGAGAAACANGAAGAATGGTGATTCTGCTCAATATGAGAATAGTTTTAATGCACCAGAGAGTGTATTTAGGGGTTCAGAAGACTGCATGTGGCATTCAGATGATGAGGAGGACTACCCCACAANTCAAAACAGTAGTAATGTGGTCAAAAGTAGTGATATCCATAAGAGGATATCACCAAAGGAAGCTGATGAGGCTTGGGACAGTGACTAGTAGNCCAGTAAATGCAACACCATCATTCATTCATTGGACTATTTCAGACTTTGTTTGGCAGGCTGATTCGAACAAATAATTGGTCCAAACAAAAAAAATATGAAGGTATGATATGAAGCCCAATATAGCCCCTCTTAGTCTCTTACTATTATCCTATCCTATCCTATCCTATCCTCAAGAGTAATGTTATTGTTACCTGCTCAAGACTCAACCCCTCAAATTGCTTGCTACTGTTCCCTACTAGTCATGATGTACGTGAAATATCATAAGTGGAGTTTCAGGCATCGTGCAAAAGAAAATTGTTTTTTTTATTATTATAGTGAAGGTATTGAATTTAATCAATTGAAATTGAGAGAGATGTGGGATTTTGTTAATTAGAGTAACTAGTACGGTATGTAATGTAGCATATAATTGTCAATTGTCAAAGTCACACACGTCAATTACAAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00130	100201	104001	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000130s00006899.1	PF01985.16	CRS1_YhbY	156	240	9.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.689
SRR1783600	control	7.824
SRR1783602	moderate drought stress	6.989
SRR1811619	moderate drought stress	7.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.973
DRR006520	Root Summer glycyrrhizin high producing strain	11.074
DRR006521	Root Winter glycyrrhizin high producing strain	3.668
DRR006522	Root Winter glycyrrhizin high producing strain	3.560
DRR006523	Root Summer glycyrrhizin low producing strain	15.750
DRR006524	Root Summer glycyrrhizin low producing strain	15.514
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.038
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.851

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.110
SRR2868004	Drought Stress (root)	5.284
SRR2967015	Control (root)	6.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.722
SRR9715740	Leaf	4.469
SRR9715741	Leaf	2.405
SRR9715739	Root	0.423
SRR9715742	Root	4.767
SRR9715743	Root	3.305

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.728
SRR8749028	MeJA induced 9h	6.996
SRR8749029	MeJA induced 9h	4.012
SRR8749030	Uninduced	1.436
SRR8749031	Uninduced	0.584
SRR8749032	Uninduced	0.465

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.834
SRR8400027	Control - Root	8.795