Gene detail

Gene detail information of Glyur000130s00006892

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38200.1	2.00E-169	Class I glutamine amidotransferase-like superfamily protein
NR	XP_003518630.1	0	PREDICTED: uncharacterized protein LOC100817990 [Glycine max]
COG	YP_001691518.1	4.00E-32	putative glutamine amidotransferase [Finegoldia magna ATCC 29328]
trEMBL	tr\|I1JDL2\|I1JDL2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G09770.1}

Sequence

Transcript Sequence

>Glyur000130s00006892.1
ATGTCTTCCGATCTCTCTGTCATTCTCCCTCGTGTTCTAATCGTTTCTAGACGAACCGTCCGTAAGAACAAGTTCGTCGATTTCGTCGTGGGGTATGGAGCAGTACCCGTGATCGTTCCCCGTGTTTCTGGTGTGCACATGTTGTTAAGTAGCTTCGAGCCAATCCACGGCGTGCTTCTCTGCGAAGGAGAAGACATAGACCCATGTTGGTACGAACAGGATCATGGGGCAGGTCTTTCCCAGGAAGAGTTGGATGAAATNCGAAGGCTTCACGCGAGTGACACTGCAATTGACAAGGAGAAAGACTCNATTGAGTTGAGCCTCGCCAAGCTCTGTCTCGAGAGGAACATTCCCTACTTGGGAATCTGTAGGGGTTCACAGGTCCTCAATGTTGCATGTGGGGGTACCCTTTATAGGGACATAGGGAAAGAGCTTTCAAACACAGTGATGCACATAAACTATGATGATTATGATGGGCATAGGCATGGTGTTAAGGTTGTTGAGAACACCCCTTTGTATCATTGGTTTAAGGATTCGTTGGAACCAATGGGTGGAAACAATGAGATTTCGGTTAATAGTTATCACCATCAAGGGGTTAAGAGATTGGCACAACGGTTTGTACCAATGGCTTTTGCCCATGATGGGTTGATTGAAGGGTTCTATGACCCTGATGCTTATAACCCAGAAGAGGGTAAGTTCATCATGGGGTTGCAATTTCACCCGGAACGTATGAGAAAGCCTGANTCTGATGAATTTGATTACCCCGGATGCCCTTTTGCTTACAAGGAATTTGTGAAGGCGGTGATTGCTTATCAGAAAAGGGTGAACACGTTAACATCGGTGCCAAAGCCTCTGAAACTTAACAAGGAAANGGAGAACAAGAGGAAGACCATAGTGCGTAGCTTTTCGCTTGCGAAAAACCTCTACACCACGGGCCGTGCGAAATGTTCTCCCAAAGAGTCTGAACATTTAATTGAAGCTGGAGCAGAATTTCTCGAGTCAAATACGGCTTTAAGTGTTCAACAAGAGAAGCGGTTAAAGCAAATGGGAGCAACGGTTAGGAATGCGGGGTCATATGTGGAGAGGCTGAAGCTGAACGAGGAAAGAGAGAAAATGGCGAGAAATATGATGGGGAAAATGTCAGTGGAGCAATTGTCTGATCTCATCTCTTTCTACCACACCATGGGACAGATTTGCTCTCAAGTATTGGAAAGAAAGCTACATGATGTTGTCAATGACTTTAGCTCATGATCCATGATTTTGTTTTTGTTTTTGTTTTTGTTTCCTTTCCCTGCCTTGCCTTGCCTTGCCTTGTGGTGGCCATGCAATTTTTGTTCTTTTTTTTTTGTTAATTAATTGGTGCGTTTTTATAGTGGGGTACGTGGGGACTCACATGAATCTTGGGTGTGTTAGGTCTCCACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00130	67073	69027	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006541 glutamine metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000130s00006892.1	PF07722.8	Peptidase_C26	20	242	4.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.154
SRR1783602	moderate drought stress	0.328
SRR1811619	moderate drought stress	0.264

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.892
DRR006520	Root Summer glycyrrhizin high producing strain	1.804
DRR006521	Root Winter glycyrrhizin high producing strain	2.015
DRR006522	Root Winter glycyrrhizin high producing strain	1.664
DRR006523	Root Summer glycyrrhizin low producing strain	2.125
DRR006524	Root Summer glycyrrhizin low producing strain	2.493
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.129
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.130

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.406
SRR2868004	Drought Stress (root)	2.969
SRR2967015	Control (root)	2.367

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.468
SRR9715740	Leaf	2.013
SRR9715741	Leaf	18.146
SRR9715739	Root	0.233
SRR9715742	Root	8.215
SRR9715743	Root	6.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.928
SRR8749028	MeJA induced 9h	16.048
SRR8749029	MeJA induced 9h	5.776
SRR8749030	Uninduced	27.676
SRR8749031	Uninduced	30.043
SRR8749032	Uninduced	11.548

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.946
SRR8400027	Control - Root	0.922