Gene detail

Gene detail information of Glyur000130s00006887

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16220.1	8.00E-18	Octicosapeptide/Phox/Bem1p family protein
NR	XP_007033178.1	4.16E-68	Octicosapeptide/Phox/Bem1p family protein, putative [Theobroma cacao]
trEMBL	tr\|A0A061EP39\|A0A061EP39_THECC	2.00E-68	Octicosapeptide/Phox/Bem1p family protein, putative {ECO:0000313\|EMBL:EOY04104.1}

Sequence

Transcript Sequence

>Glyur000130s00006887.1
CGTTAACGTCACTACTCTTTCATTCCAACGTTAGGGCTATCCTCTCTCTCTTTCTCTGTCTCTGTTTTCGTAAGCCTAAGCTAAGCAAAGTGTTGTTTGTGTTGTGTGTTGAGGTGACACGGCAGCGCGATGGAGGCGGCACAACCCAGCGGCAGCGGCAAGCTGCGTGTGATGTGCAGCTACGGCGGGCAAATACTCCCCCGTCCCCGTCCCCGCACCACCTCTTTCTGGTACGTCGGCGGCGACACCCGAATCCTCTCAATGGACCGCTCCACCGTCACCACCCTCTCCTCGCTGGTTTCCCACCTCTCTTCCGCCCTCTCCCTCACCTCCCCCTTCTCCGTCAAGTACCAGCTTCCCCACCTCGACCTCGANTCCCTCATCTCCCTCGCCTCCGACGACGACCTCCACATCCTCATCGACGAGCACAACCGCCTCTCCTCCTCCCGCATCAGACTCTTCCTCTTCCCCCTCATCATTCCCCACCCCAAAACCGAGTCTTGGTTCTTCGACGCCCTCAACAGTGCCGCCATTATGCAAAACTCTATGCACCATCATCACCACTTTCCCTCTCCCCCCGCCCCTGACTCCATGCTTTTGGAAACTACTTCCTCTTTTGGCTCTGCTTCCTCTTCCACTTCCTTCACCAATTTGCCTCCCCTCAGAGTACCCCACCCCGACGACAACGANGCCCTTTTCAAATTCTCCTCTTCTGATACAATTCCAAGTGAGAATAGTGTTTCAAGTATTGTGTCTCCCCAGCAGAATATAATATCTTACCAATACCATGACCCNGTGGAGGAGGCAAGACTCAGTGCTGCTGAATCATCTATTGAAGTTGAAAGTACATCAATGCCTTCCTCTGGGGTCATGGCCAATATTAACACCAATGTGGATAATATGGGGACTTCTTCATTTCCACAGTTTAACCAAGTGGTGGTGGAGAGACCACATTTGCAGTTTGTGCAAGCTGCTGCACACTTTCAACCATCTTGCCACCAGCTCGTTTACCAGCCAGTGCCACCACCGCCACGTCCTTTGCAGCATCTGGTTTATCATCATCCCAATCAACCCTCCCCTCTCTACCTTGTGCCTATAATTGGAAACATGCCTCCCAAACCCAATAGTTTGCCTATAATTTGTGCCTCTGGCCAAGCTTCATTGAATCTAAATGCTTCCCCTTTGAATTACTTTACAGCTGCCAATGCAACCACATCTCTTGTTTATGTGCCTTGCAATGGAAGTCTTCAGCAACGAGAAATTATGGATAGTTATCCAATGAATCACAAGTCTCAGAATGTGTCTGTTGTCACATCCATGGAGTCTCCCAAGTATGGCTCAAATGAACTTGATGATGAAATTGCTCGTGTTCAGATATATAAATCTCAGCCCCCACCTCCCACAAATATGCATTCTAAATACCAAACCATGACAAAGGATACGACAAACTTGTTATCAGAGGCTCTTACTCAGTTGCATGTGGATAACCTCAAGCAGCAGATCACAGAAACATCACAACCACAATGATTGTAAATTTCTGGAAGATATATACAGTTTTGGTAGAAGTTNTATACTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00130	47013	48850	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000130s00006887.1	PF00564.19	PB1	30	114	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.343
SRR1783600	control	4.391
SRR1783602	moderate drought stress	7.076
SRR1811619	moderate drought stress	6.770

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.846
DRR006520	Root Summer glycyrrhizin high producing strain	5.708
DRR006521	Root Winter glycyrrhizin high producing strain	1.980
DRR006522	Root Winter glycyrrhizin high producing strain	1.651
DRR006523	Root Summer glycyrrhizin low producing strain	2.726
DRR006524	Root Summer glycyrrhizin low producing strain	2.524
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.136
SRR2868004	Drought Stress (root)	3.812
SRR2967015	Control (root)	3.450

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.803
SRR9715740	Leaf	0.626
SRR9715741	Leaf	0.505
SRR9715739	Root	2.271
SRR9715742	Root	3.081
SRR9715743	Root	2.269

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.185
SRR8749028	MeJA induced 9h	2.829
SRR8749029	MeJA induced 9h	2.207
SRR8749030	Uninduced	0.861
SRR8749031	Uninduced	0.489
SRR8749032	Uninduced	0.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.761
SRR8400027	Control - Root	5.712