Gene detail

Gene detail information of Glyur000130s00006885

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66760.2	1.00E-118	MATE efflux family protein
NR	XP_004489193.1	0	PREDICTED: MATE efflux family protein 9-like [Cicer arietinum]
COG	YP_003264696.1	1.00E-22	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8RWF5\|MATE9_ARATH	2.00E-131	MATE efflux family protein 9
trEMBL	tr\|I1N5M0\|I1N5M0_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000130s00006885.1
CTTGTTTATTTTATTCTTTTTGGGGAGAAAAAGAGAGGACCTTTCTGGTTTCTGGTCCTATATATTTCTCTCTTCCTCACATNTGTTGGGTGAACATTGCTCACCATGGAAAACTCTAGAGAAATGGGTAAGGAGGTGACAGCACCACTGTTGCTGAACAAGAGTAGTGAAGAAGAGGAGAACAATAATAATAATGGAGGAGTTGGTGGGTTAAAGTTAGAGGGAACATTTATTCAAGAGCTGAAAAGGGTGAGCTTCATGGCAGCTCCAATGGTGGCTGTGACGGTGTCGCAGTACCTTCTGCAAGTGGTGTCCCTCATGATGGTGGGCCATCTTGGGATACTTGTTTCTTTCTCTGGGGTTGCCATTGCCATGTCCTTTGCTGAAGTTACTGGCTTCAGTGTCCTCTTGGGGATGGCGGGTGCATTGGAAACTCTATGTGGCCAAACGTACGGTGCAGAGGAGTATNGGAAGCTTGGGAACTACACATTCTGTGCAATTGTGACCCTGCTAGCTGTTTGTGTCCCAATATCTGTGGTGTGGGCATTCACGGATAAGATACTGATGCTGTTCAGCCAAGACGCAGGGATATCGGAAGTGGCGCGTGAGTACTGCGTGTACNTGATTCCGGGGCTGTTTGGCTATGCGGTTCTGCAGGCGTTGACACGCTACTTGCAGACTCAGAGTATGATCTTTCCCATGGTCTTTAGCTCTATTACCGCTCTGTTTTTGCATGTTCCTATATGTTGGGGTCTGGTATTTAAGTTTGGACTTGGCCACGTTGGAGCCGCTTTGGCCATTGGCGTTTCCTATTGGTTGAANGTCGTTTGGCTTGCCATTTATATCCACTACTCCCCCGCTTGCCAAAAAACCAAGATCCTCTTTTCTACTTCTGCTTTACTTTGCATCCCAGAGTTCTTCCGATATGCTATCCCTTCTGGCTTCATGTTTTGTACTCGGGTTTCAAATGAATTGGGAGCAGGGAATCCAAGGACAGCTAAGGGAGCTGTCCGTGTGGTTGTGATGCTTGGGGTTGCTGAGGCAATTATTGTGAGCACATTCTTCATTTGTTTCAGACACATATTAGGATATGCTTATAGCAACGATGAGCAAGTTGTGGCATACATTTCTGAGATGGTTCCCCTTCTCTGTATATCTGTCAGTGCCGATAGTCTAATTGGAGCACTTTCCGGGATTGCAAGAGGAGGAGGATTTCAGCAGATAGGGGCATATGTGAACCTAGGAGCCTACTATCTTGTGGGGATTCCTATGGGTTTGTTATTGGGTTTTCATCTACACCTAAATGCCAAGGGGCTGTGGATGGGAACCCTATCAGGGTCTGTTCTTCAAGTCATTATACTTGCTATTGTAACCNCATTAACAGATTGGCAGAAAGAGGCAACAAAAGCAAGGGAGAGGATAATTGANCAGTCAATCAAAACTCATAACGCATTGGTATAAGAAAACTGATGAAGGATAAGAGAGTGGAAGTACTAACAGTGTTCTGTCATTTGTTTTTCCTGTTTTTTTTTTTTTGGTTTTTGCTCTGACTGTCACCCGGCAGTGGAAAATAGAGAGAGAGAGAGAGGATAGTGTTCTGCTTTTTGTTATCTNGTTAAAAGAACAGCTGTTTCGTGGGTGTGGAAGTGTTTGTTTTTTCATGGGGAGTGAAANAGATTTAATTATGTTATTATTAACATACAGATCACTTTCTTTGCACATATATGTGATTCTTGTACTGGATTCTTATTCTTATGATAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00130	32903	36417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000130s00006885.1	PF01554.13	MatE	55	215	1.80E-25
Glyur000130s00006885.1	PF01554.13	MatE	274	391	7.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.701
SRR1783600	control	20.951
SRR1783602	moderate drought stress	19.093
SRR1811619	moderate drought stress	18.819

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.353
DRR006520	Root Summer glycyrrhizin high producing strain	46.825
DRR006521	Root Winter glycyrrhizin high producing strain	9.335
DRR006522	Root Winter glycyrrhizin high producing strain	9.121
DRR006523	Root Summer glycyrrhizin low producing strain	23.471
DRR006524	Root Summer glycyrrhizin low producing strain	23.632
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.342
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.361

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.750
SRR2868004	Drought Stress (root)	45.607
SRR2967015	Control (root)	35.228

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.369
SRR9715740	Leaf	5.388
SRR9715741	Leaf	21.311
SRR9715739	Root	47.623
SRR9715742	Root	127.253
SRR9715743	Root	116.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.331
SRR8749028	MeJA induced 9h	22.049
SRR8749029	MeJA induced 9h	13.649
SRR8749030	Uninduced	56.191
SRR8749031	Uninduced	38.383
SRR8749032	Uninduced	58.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.561
SRR8400027	Control - Root	48.989