Gene detail

Gene detail information of Glyur000130s00006878

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	ATCG00810.1	2.00E-40	ribosomal protein L22
NR	XP_004489180.1	4.07E-100	PREDICTED: 50S ribosomal protein L22, chloroplastic-like [Cicer arietinum]
COG	YP_007108337.1	6.00E-39	50S ribosomal protein L22 [Geitlerinema sp. PCC 7407]
Swissprot	tr\|P49163\|RK22_MEDSA	2.00E-89	50S ribosomal protein L22, chloroplastic (Precursor)
trEMBL	tr\|I1K1P2\|I1K1P2_SOYBN	1.00E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G09270.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00130	1158	3039	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

GO:0015934 large ribosomal subunit

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000130s00006878.1	PF00237.14	Ribosomal_L22	91	194	2.10E-35

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	58.893
SRR1783600	control	59.143
SRR1783602	moderate drought stress	32.055
SRR1811619	moderate drought stress	32.307

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.077
DRR006520	Root Summer glycyrrhizin high producing strain	30.612
DRR006521	Root Winter glycyrrhizin high producing strain	33.128
DRR006522	Root Winter glycyrrhizin high producing strain	32.396
DRR006523	Root Summer glycyrrhizin low producing strain	50.553
DRR006524	Root Summer glycyrrhizin low producing strain	50.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	369.713
DRR006526	Leaf Summer glycyrrhizin high producing strain	366.939

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.378
SRR2868004	Drought Stress (root)	19.242
SRR2967015	Control (root)	19.818

SRA Experiment	Description	TPM
SRR9715738	Leaf	137.205
SRR9715740	Leaf	200.024
SRR9715741	Leaf	95.180
SRR9715739	Root	21.155
SRR9715742	Root	22.482
SRR9715743	Root	20.438

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.423
SRR8749028	MeJA induced 9h	27.380
SRR8749029	MeJA induced 9h	27.265
SRR8749030	Uninduced	20.655
SRR8749031	Uninduced	18.410
SRR8749032	Uninduced	22.487

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.100
SRR8400027	Control - Root	35.546