Gene detail

Gene detail information of Glyur000129s00012485

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14580.1	7.00E-119	CBL-interacting protein kinase 4
NR	KEH42795.1	0	CBL-interacting kinase [Medicago truncatula]
COG	YP_823396.1	5.00E-32	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9XIW0\|CIPK7_ARATH	2.00E-159	CBL-interacting serine/threonine-protein kinase 7
trEMBL	tr\|A0A072VXI4\|A0A072VXI4_MEDTR	0	CBL-interacting kinase {ECO:0000313\|EMBL:KEH42795.1}

Sequence

Transcript Sequence

>Glyur000129s00012485.1
ATGGAACCGCCATTGCAACCTCCACCGCCGCGCTCCACTACCATCCTCGGAAAGTACCAGCTCACGCGCCTCCTTGGCCGCGGCAGCTTCGCCAAGGTCTACCAGGCCCGTTCCCTCGTCGACGGCGTCACCGTCGCCGTCAAGGTCATCGACAAGTCCAAGACGGTAGACGCCGCCATGGAGCCCCGCATCATCCGCGAGATCNACGCCATGCGCCGCCTCCACCACCACCCCAACATCCTCCGAATCCACGAGGTCATGGCCACCAAGACCAAGATCCACCTCGTCGTCGAGTTCGCCGCCGGCGGTGAGCTCTTCTCCGCCATCGCCCGCCGAGGACGCCTCCCGGAGTCCACCGCACGCTGCTACTTCCAGCAGCTCGTCTCCGCCCTCCGCTTCTGCCACCGCAACGGCGTCGCCCACCGCGACCTCAAGCCCCAGAACCTCCTCCTCGACGGCCACGGCAACCTCAAGGTCTCCGACTTCGGACTCTCCGCACTCCCGGANCACCTCAGCAACGGCCTCCTCCACACCGCATGCGGCACGCCGGCATACACCGCGCCGGAGATCCTCCGCAGGAGCGGCGGCTACGACGGGTCCAAGGCCGANGCGTGGTCGTGCGGCCTCGTACTCTACGTCCTCCTGGCCGGCCACCTCCCGTTCGACGATTCCAACATCCCGGCGATGTGCAAGAAGATGTCCCGGCGAGATTACCGGTACCCGGAGTGGATCTCGAAGCGGGCACGNTTCGTTATCCACCGGTTGCTCGACCCGAACCCGGGAACCCGAATGAGCCTGGAGGCTTTGTTTGGGAACGAGTGGTTCAAAAAATCGCTGAGAACNGAAGCGGAAGAGAGGGCGTTGAGGTTGGATGCNGGTTATGGCAACGAATTGGGGAAGGGTTTGGGTGTGAACGCGTTTCACATAATATCCATGTCGTCGGGTTTGGACTTGAGGGGGTTGTTTGAAACGACGACGTCGTTGGAGGGTGGTGGTGGGAGTGGGATTAATAGGAGGGAGAAGAGGTTCACGTCGAGCGCGAGGGTGGAGGTGGTGGAGGAGAAGGTGAAGGAGGTGGGAGGGGTTTTGGGGTTTAAGGTTGAGGTGATTGGGAAGAACAGTAGTGNGATTGGGTTGGTGAAAGGGAAGGTTGTTCTTGTGGTTGAGGTGTTTGAGATTGTGCCTTCTCAGCTTCTGTTGGTGGCTGTGAAGGTTGTGGAGGGTGGTTTGGAGTTTGAGGACCACCATTGGGGGGATTGGAAAACTGCTTTGCAAGACCTTGTGCTTTCCTGGNACAATATTGAAGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00129	297570	298880	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000129s00012485.1	PF00069.20	Pkinase	19	275	7.30E-65
Glyur000129s00012485.1	PF03822.9	NAF	304	368	1.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	171.040
SRR1783600	control	172.008
SRR1783602	moderate drought stress	344.422
SRR1811619	moderate drought stress	402.102

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	208.008
DRR006520	Root Summer glycyrrhizin high producing strain	205.349
DRR006521	Root Winter glycyrrhizin high producing strain	144.850
DRR006522	Root Winter glycyrrhizin high producing strain	143.629
DRR006523	Root Summer glycyrrhizin low producing strain	56.050
DRR006524	Root Summer glycyrrhizin low producing strain	55.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.426
SRR2868004	Drought Stress (root)	7.545
SRR2967015	Control (root)	9.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.629
SRR9715740	Leaf	7.005
SRR9715741	Leaf	5.277
SRR9715739	Root	152.810
SRR9715742	Root	129.277
SRR9715743	Root	136.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.637
SRR8749028	MeJA induced 9h	0.423
SRR8749029	MeJA induced 9h	0.267
SRR8749030	Uninduced	0.495
SRR8749031	Uninduced	0.070
SRR8749032	Uninduced	0.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.491
SRR8400027	Control - Root	25.906