Gene detail information of Glyur000129s00012482 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63540.1 | 8.00E-46 | Domain of unknown function (DUF1767) |
| NR | XP_003532397.2 | 2.77E-80 | PREDICTED: recQ-mediated genome instability protein 1-like [Glycine max] |
| Swissprot | tr|Q5XUX6|RMI1_ARATH | 4.00E-56 | RecQ-mediated genome instability protein 1 |
| trEMBL | tr|I1KP59|I1KP59_SOYBN | 1.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G01380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00129 | 292909 | 294688 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000129s00012482.1 | PF08585.7 | DUF1767 | 75 | 166 | 2.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.192 |
| SRR1783600 | control | 2.145 |
| SRR1783602 | moderate drought stress | 12.332 |
| SRR1811619 | moderate drought stress | 10.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.467 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.671 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.437 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.883 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.794 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.626 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.401 |
| SRR2868004 | Drought Stress (root) | 0.473 |
| SRR2967015 | Control (root) | 1.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.216 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.071 |
| SRR9715739 | Root | 0.188 |
| SRR9715742 | Root | 0.134 |
| SRR9715743 | Root | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.626 |
| SRR8749028 | MeJA induced 9h | 1.671 |
| SRR8749029 | MeJA induced 9h | 0.733 |
| SRR8749030 | Uninduced | 3.362 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.500 |
| SRR8400027 | Control - Root | 2.348 |